human
***task***
the task is to summarize an input biomedical literature in six sentences

***input***
the input is a biomedical literature

***output***
the output is the summary of an input biomedical literature in six sentences

***documentation***

***examples***

input: multiple sclerosis ( ms ) , as a juvenile disabling disorder , is the most prevalent central nervous system inflammatory and demyelinating disease . nearly all researchers believe that focal lymphocytic infiltration in the brain and spinal cord , which is found in ms , can damage the myelin sheet of the neuron axon , which is made by oligodendrocytes . in the early stages , ms is characterized by recovering episodes of neurological impairments ; however , almost any neurological symptom can appear later with the disease , which often progresses to physical and cognitive disability . two - thirds of the deaths in ms patients are directly related to the consequences of the disease . suicide also has a higher prevalence than in the healthy population , and infections and complications are especially hazardous for the more disabled ones . although not considered hereditary , a number of genetic variations have been shown to increase the risk of ms . however , different environmental factors , both of infectious ( epstein - barr virus and measles ) and noninfectious origin ( vitamin d deficiency , low uric acid and cigarette smoking ) have been demonstrated as risk factors for ms . nowadays , chronic infections such as helicobacter pylori ( hp ) have been hypothesized to modulate the immune system to prevent its hyperactivity , which can result in allergies and autoimmune disorders . few studies in high - incidence countries such as japan have demonstrated that hp has protective effects on ms . hp is a micro - aerophilic gram - negative bacterium that is present in more than half of any population . its prevalence positively correlates with age and is well known in gastro - intestinal ulcers pathophysiology . compared to other countries with the same latitude , the iranian population has higher hp prevalence . although the incidence of ms is rising in high socio - economic levels and its higher rate affects the younger age group , noting the low mean age of our country , this disease can be a heavy economical and physiological burden . thus , to determine one of the population aspects of these factors , we aim to find the relation between hp infection and ms in iran . all patients with definite ms , diagnosed using the mcdonald criteria , in rasoul - akram hospital for the years 2009 and 2010 were included consecutively in our case - control study . the patients were divided into two categories of ms for further evaluation : conventional and opticospinal ( based on revised criteria for nmo ) . the control group consists of non - ms ambulatory clinical patients , who were matched for age and gender . none of the case or control group individuals have received the standard four - drug therapy or any non - standard medication for hp or any cytotoxic medicine . the study was approved by ethical committee of tehran university of medical sciences and all patients were informed of the study and provided their oral and written consent before participating in the study . demographic information from all cases was collected from their medical records and entered to a checklist . the edss quantifies disability in eight functional systems ( pyramidal , sensory , visual etc . ) and allows neurologists to assign a functional system score ( fss ) in each of these . the result is a number between zero ( best function , no deficit due to ms ) and 10 ( death due to ms ) . anti hp igg antibody and anti hp igm antibody were measured in the individuals using solid - phase enzyme - linked immunosorbent assay ( elisa ) based on the sandwich principle ( immune biological laboratories gmbh , hamburg , germany ) . values of more than 12 u / ml for both tests were considered as positive . intra - assay and inter - assay 95 % ci for the igg kit was 8.5 % and 6.3 % and for the igm kit was 8.1 % and 11.53 % , respectively . individuals with negative igm and positive igg were included in our chronic hp seropositive group . massachusetts , usa ) and appropriate statistical tests such as chi - square and t - test were performed . all patients with definite ms , diagnosed using the mcdonald criteria , in rasoul - akram hospital for the years 2009 and 2010 were included consecutively in our case - control study . the patients were divided into two categories of ms for further evaluation : conventional and opticospinal ( based on revised criteria for nmo ) . the control group consists of non - ms ambulatory clinical patients , who were matched for age and gender . none of the case or control group individuals have received the standard four - drug therapy or any non - standard medication for hp or any cytotoxic medicine . the study was approved by ethical committee of tehran university of medical sciences and all patients were informed of the study and provided their oral and written consent before participating in the study . demographic information from all cases was collected from their medical records and entered to a checklist . the edss quantifies disability in eight functional systems ( pyramidal , sensory , visual etc . ) and allows neurologists to assign a functional system score ( fss ) in each of these . the result is a number between zero ( best function , no deficit due to ms ) and 10 ( death due to ms ) . anti hp igg antibody and anti hp igm antibody were measured in the individuals using solid - phase enzyme - linked immunosorbent assay ( elisa ) based on the sandwich principle ( immune biological laboratories gmbh , hamburg , germany ) . values of more than 12 u / ml for both tests were considered as positive . intra - assay and inter - assay 95 % ci for the igg kit was 8.5 % and 6.3 % and for the igm kit was 8.1 % and 11.53 % , respectively . individuals with negative igm and positive igg were included in our chronic hp seropositive group . massachusetts , usa ) and appropriate statistical tests such as chi - square and t - test were performed . at the end of the study , 163 ms patients consisting of 76 ( 47 % ) females and 87 ( 53 % ) males were included . our case group consisted of 150 age - and sex - matched non - ms individuals ( table 1 ) . from the total 163 ms patients , 76 ( 46.6 % ) were convetional ms ( cms ) and the other 87 ( 53.4 % ) were opticospinal ms ( osms ) . in addition , 137 ( 84 % ) patients suffered from relapsing - remitting ms and the other 26 ( 16 % ) suffered from secondary progressive ms . hp seropositivity were seen in 88 ( 54 % ) of the ms group and in 110 ( 73 % ) of the non - ms group ( figure 1 ) . a significant difference was seen in seropositivity between these two groups ( p 0.001 ) , but no significant difference was seen in seropositivity between conventional and opticospinal ms [ 39 ( 51 % ) vs. 49 ( 56 % ) , ( p = 0.522 ) ] ( figure 2 ) . no significant difference was seen in seropositivity among age ( p = 0.075 ) and between genders ( p = 0.204 ) . a significant difference was seen in edss between seropositive ( 2.100.32 ) and seronegative ( 2.650.35 ) patients ( p = 0.017 ) . its direct cause has not yet been disclosed and there are several pathways hypothesized for its etiology in the literature . however , to date , autoimmunity is the most acceptable explanation . environmental factors such as viral and bacterial infections can precipitate , worsen or protect patients from ms . this study was performed to demonstrate the relation between hp infection and ms in our population . in our studyhowever , in other similar studies , a high female - to male - ratio ( 2 - 3:1 ) was demonstrated , probably due to hormonal influences . furthermore , the mean age of our individuals was near 32 years , which is significantly lower than other studies . it seems that the higher prevalence of males in our study was related to the lower age of onset of the disease in our country , perhaps due to ethnical , genetic , or environmental factors . the iranian population has been categorized into low ms prevalent countries . in the abedini et al. s study in 2008 , iran has been categorized into moderate ms prevalent , among other mediterranean countries such as egypt and ukraine , with a ratio of 21.1:100,000 . this study showed that the prevalence of hp infection was significantly lower in ms patients . however , no significant difference was observed in hp seropositivity in ms and non - ms patients in wender et al. s study . hp is the most prevalent chronic bacterial infection in humans , as seen in all countries and all ages . developing countries have more infected population than developed ones , and the prevalence of hp infection in some countries may reach 80 % . first , a bacterial infection can influence the balance between cellular t helper 1 and t helper 2 responses , which is relevant to the development of allergic diseases . second , infection may be associated with increased productionof interlukin 10 , which possesses anti - allergic properties and has been shown to suppress lipopolysacccharide activated eosinophiles in allergic disease models . third , a bacterial antigen may compete with other environmental antigens responsible for the atopic condition . fourth , components of bacterial products may also act as superantigens , selectively including activation or deletionof specific t - cell subsets . fifth , there is emerging evidence that a category of receptors for bacterial components on mononuclear cell membranes , the toll - like receptors , may signal for the production of immunosuppressant cytokines by the mononuclear cells . knowing that autoimmunity is one of the most important components in ms , it should be suspected that prior chronic infections can accelerate t helper type 1 cells and decrease the activation of type 2 t helpers in these patients . as our study shows , no significant difference was found in hp infected patients between conventional ms ( cms ) and opticospinal ms . in a study by li et al . in japan , hp seropositivity was significantly lower in patients with cms ( 22.6 % ) compared with patients with osms ( 51.9 % ) and the normal population ( p = 0.0019 and p = 0.0181 , respectively ) . this study has also reported that perhaps hp neutrophil activating protein ( hpnap ) may be associated with the pathology in a subgroup of cms patients , another theory for the hp protective factor . in our study , hp seropositivity showed a significant inverse correlation with mean edss . these findings suggest that h. pylori infection is a protective factor against iranian cms patients . study ; suggesting that hp can achieve a protective state even in patients that have already developed ms . this study reveals that patients with hp infection have lower incidence or lower complication of ms . these results among other studies can lead to a theory that hp infection may have an immunological or protective influence on ms pathogenesis .
output:

agent
multiple sclerosis ( ms ) is the most prevalent central nervous system demyelinating disease . there are known risk factors for ms . however , there is uncertainty in its protective factors . few studies have demonstrated that some chronic infections may have protective effects on this disease . we carried this study to investigate the relation between helicobacter pylori ( hp ) infection and the prevalence and severity of ms . in this case - control study , 163 ms patients and 150 sex - and age - matched controls were included . blood samples for igg and igm anti hp antibodies were collected from all individuals . also , the expanded disability status scale ( edss ) was used to evaluate the ms patients . suitable statistical analysis was applied . a significant difference was observed in seropositivity between these two groups ( p < 0.001 ) but no significant difference was seen in seropositivity between conventional and opticospinal ms ( p = 0.522 ) . no significant difference was observed in seropositivity among ages ( p = 0.075 ) and between genders ( p = 0.204 ) . a significant difference was seen in edss value between seropositive and seronegative patients ( p = 0.017 ) . we concluded that patients with hp infection had lower incidence of multiple sclerosis and ms patients with hp infection showed lower neurologic complications , which can demonstrate that hp infection may have a protective influence on ms pathogenesis .
***task***
the task is to summarize an input biomedical literature in six sentences

***input***
the input is a biomedical literature

***output***
the output is the summary of an input biomedical literature in six sentences

***documentation***

***examples***

input: multiple sclerosis ( ms ) , as a juvenile disabling disorder , is the most prevalent central nervous system inflammatory and demyelinating disease . nearly all researchers believe that focal lymphocytic infiltration in the brain and spinal cord , which is found in ms , can damage the myelin sheet of the neuron axon , which is made by oligodendrocytes . in the early stages , ms is characterized by recovering episodes of neurological impairments ; however , almost any neurological symptom can appear later with the disease , which often progresses to physical and cognitive disability . two - thirds of the deaths in ms patients are directly related to the consequences of the disease . suicide also has a higher prevalence than in the healthy population , and infections and complications are especially hazardous for the more disabled ones . although not considered hereditary , a number of genetic variations have been shown to increase the risk of ms . however , different environmental factors , both of infectious ( epstein - barr virus and measles ) and noninfectious origin ( vitamin d deficiency , low uric acid and cigarette smoking ) have been demonstrated as risk factors for ms . nowadays , chronic infections such as helicobacter pylori ( hp ) have been hypothesized to modulate the immune system to prevent its hyperactivity , which can result in allergies and autoimmune disorders . few studies in high - incidence countries such as japan have demonstrated that hp has protective effects on ms . hp is a micro - aerophilic gram - negative bacterium that is present in more than half of any population . its prevalence positively correlates with age and is well known in gastro - intestinal ulcers pathophysiology . compared to other countries with the same latitude , the iranian population has higher hp prevalence . although the incidence of ms is rising in high socio - economic levels and its higher rate affects the younger age group , noting the low mean age of our country , this disease can be a heavy economical and physiological burden . thus , to determine one of the population aspects of these factors , we aim to find the relation between hp infection and ms in iran . all patients with definite ms , diagnosed using the mcdonald criteria , in rasoul - akram hospital for the years 2009 and 2010 were included consecutively in our case - control study . the patients were divided into two categories of ms for further evaluation : conventional and opticospinal ( based on revised criteria for nmo ) . the control group consists of non - ms ambulatory clinical patients , who were matched for age and gender . none of the case or control group individuals have received the standard four - drug therapy or any non - standard medication for hp or any cytotoxic medicine . the study was approved by ethical committee of tehran university of medical sciences and all patients were informed of the study and provided their oral and written consent before participating in the study . demographic information from all cases was collected from their medical records and entered to a checklist . the edss quantifies disability in eight functional systems ( pyramidal , sensory , visual etc . ) and allows neurologists to assign a functional system score ( fss ) in each of these . the result is a number between zero ( best function , no deficit due to ms ) and 10 ( death due to ms ) . anti hp igg antibody and anti hp igm antibody were measured in the individuals using solid - phase enzyme - linked immunosorbent assay ( elisa ) based on the sandwich principle ( immune biological laboratories gmbh , hamburg , germany ) . values of more than 12 u / ml for both tests were considered as positive . intra - assay and inter - assay 95 % ci for the igg kit was 8.5 % and 6.3 % and for the igm kit was 8.1 % and 11.53 % , respectively . individuals with negative igm and positive igg were included in our chronic hp seropositive group . massachusetts , usa ) and appropriate statistical tests such as chi - square and t - test were performed . all patients with definite ms , diagnosed using the mcdonald criteria , in rasoul - akram hospital for the years 2009 and 2010 were included consecutively in our case - control study . the patients were divided into two categories of ms for further evaluation : conventional and opticospinal ( based on revised criteria for nmo ) . the control group consists of non - ms ambulatory clinical patients , who were matched for age and gender . none of the case or control group individuals have received the standard four - drug therapy or any non - standard medication for hp or any cytotoxic medicine . the study was approved by ethical committee of tehran university of medical sciences and all patients were informed of the study and provided their oral and written consent before participating in the study . demographic information from all cases was collected from their medical records and entered to a checklist . the edss quantifies disability in eight functional systems ( pyramidal , sensory , visual etc . ) and allows neurologists to assign a functional system score ( fss ) in each of these . the result is a number between zero ( best function , no deficit due to ms ) and 10 ( death due to ms ) . anti hp igg antibody and anti hp igm antibody were measured in the individuals using solid - phase enzyme - linked immunosorbent assay ( elisa ) based on the sandwich principle ( immune biological laboratories gmbh , hamburg , germany ) . values of more than 12 u / ml for both tests were considered as positive . intra - assay and inter - assay 95 % ci for the igg kit was 8.5 % and 6.3 % and for the igm kit was 8.1 % and 11.53 % , respectively . individuals with negative igm and positive igg were included in our chronic hp seropositive group . massachusetts , usa ) and appropriate statistical tests such as chi - square and t - test were performed . at the end of the study , 163 ms patients consisting of 76 ( 47 % ) females and 87 ( 53 % ) males were included . our case group consisted of 150 age - and sex - matched non - ms individuals ( table 1 ) . from the total 163 ms patients , 76 ( 46.6 % ) were convetional ms ( cms ) and the other 87 ( 53.4 % ) were opticospinal ms ( osms ) . in addition , 137 ( 84 % ) patients suffered from relapsing - remitting ms and the other 26 ( 16 % ) suffered from secondary progressive ms . hp seropositivity were seen in 88 ( 54 % ) of the ms group and in 110 ( 73 % ) of the non - ms group ( figure 1 ) . a significant difference was seen in seropositivity between these two groups ( p 0.001 ) , but no significant difference was seen in seropositivity between conventional and opticospinal ms [ 39 ( 51 % ) vs. 49 ( 56 % ) , ( p = 0.522 ) ] ( figure 2 ) . no significant difference was seen in seropositivity among age ( p = 0.075 ) and between genders ( p = 0.204 ) . a significant difference was seen in edss between seropositive ( 2.100.32 ) and seronegative ( 2.650.35 ) patients ( p = 0.017 ) . its direct cause has not yet been disclosed and there are several pathways hypothesized for its etiology in the literature . however , to date , autoimmunity is the most acceptable explanation . environmental factors such as viral and bacterial infections can precipitate , worsen or protect patients from ms . this study was performed to demonstrate the relation between hp infection and ms in our population . in our studyhowever , in other similar studies , a high female - to male - ratio ( 2 - 3:1 ) was demonstrated , probably due to hormonal influences . furthermore , the mean age of our individuals was near 32 years , which is significantly lower than other studies . it seems that the higher prevalence of males in our study was related to the lower age of onset of the disease in our country , perhaps due to ethnical , genetic , or environmental factors . the iranian population has been categorized into low ms prevalent countries . in the abedini et al. s study in 2008 , iran has been categorized into moderate ms prevalent , among other mediterranean countries such as egypt and ukraine , with a ratio of 21.1:100,000 . this study showed that the prevalence of hp infection was significantly lower in ms patients . however , no significant difference was observed in hp seropositivity in ms and non - ms patients in wender et al. s study . hp is the most prevalent chronic bacterial infection in humans , as seen in all countries and all ages . developing countries have more infected population than developed ones , and the prevalence of hp infection in some countries may reach 80 % . first , a bacterial infection can influence the balance between cellular t helper 1 and t helper 2 responses , which is relevant to the development of allergic diseases . second , infection may be associated with increased productionof interlukin 10 , which possesses anti - allergic properties and has been shown to suppress lipopolysacccharide activated eosinophiles in allergic disease models . third , a bacterial antigen may compete with other environmental antigens responsible for the atopic condition . fourth , components of bacterial products may also act as superantigens , selectively including activation or deletionof specific t - cell subsets . fifth , there is emerging evidence that a category of receptors for bacterial components on mononuclear cell membranes , the toll - like receptors , may signal for the production of immunosuppressant cytokines by the mononuclear cells . knowing that autoimmunity is one of the most important components in ms , it should be suspected that prior chronic infections can accelerate t helper type 1 cells and decrease the activation of type 2 t helpers in these patients . as our study shows , no significant difference was found in hp infected patients between conventional ms ( cms ) and opticospinal ms . in a study by li et al . in japan , hp seropositivity was significantly lower in patients with cms ( 22.6 % ) compared with patients with osms ( 51.9 % ) and the normal population ( p = 0.0019 and p = 0.0181 , respectively ) . this study has also reported that perhaps hp neutrophil activating protein ( hpnap ) may be associated with the pathology in a subgroup of cms patients , another theory for the hp protective factor . in our study , hp seropositivity showed a significant inverse correlation with mean edss . these findings suggest that h. pylori infection is a protective factor against iranian cms patients . study ; suggesting that hp can achieve a protective state even in patients that have already developed ms . this study reveals that patients with hp infection have lower incidence or lower complication of ms . these results among other studies can lead to a theory that hp infection may have an immunological or protective influence on ms pathogenesis .
output:
