amphioxus is sometimes referred to as an  acraniate  , which is the counterpart of  craniate  and means headless animal . as discussed elsewhere , evidence of cephalization in protochordates can be seen both developmentally and anatomically . in particular , a comparison of developmental gene expression between amphioxus and vertebrates revealed evolutionarily conserved anteroposterior and dorsoventral patterns of the neural tubes 1 , 2 , 3 . these molecular correspondences at the embryonic and larval stages can sometimes be related to morphological outcomes seen in adult anatomy , as exemplified by the repeatedly promulgated homology between the vertebrate neurohypophysis and the infundibular organ of amphioxus 4 , 5 , 6 , 7 . despite a series of detailed , em - based neuroanatomical work by lacalli and colleagues 8 , there is no convincing evidence that amphioxus have no regions comparable to telencephalon - derived structures such as the cerebrum and olfactory bulb , suggesting that these are vertebrate innovations . this idea coincides with recent findings that the genes required for the formation of telencephalic structures in vertebrates show no comparable expression in amphioxus 9 , 10 ; further , the most anterior region of the amphioxus brain vesicle can not be comparable to any region of vertebrates based on developmental gene expression patterns 11 . the vertebrate brain , according to the definition by ayers 12 , is an anterior portion of the neural tubes associated with organs of special senses . in other words , elaborations of the sensory organs and central nervous system undoubtedly underlie the appearance of considerably cephalized animal like vertebrates , and sensory organs and the central nervous system may have evolved in a mutually affecting manner , both functionally and embryologically . it is thus necessary to investigate the developmental and functional aspects of the amphioxus sensory system and to compare it with those of vertebrates . morphological descriptive works are beyond the scope of this review but have been reviewed by others 13 , 14 . instead , this article focuses on recent molecular studies on the amphioxus epithelial sensory cells and photosensory cells . molecular phylogenetic analyses on the gpcr genes draw a picture of sensory system evolution in the chordate lineage , and , together with gpcr gene expression , make us possible to infer functional and evolutionary aspects of the amphioxus sensory cells . i introduce studies on the amphioxus opsin genes as a typical example of this line of research and discuss a possibility of g protein - coupled receptor ( gpcr ) genes for characterizing the amphioxus sensory cells . the epithelial sensory cells of amphioxus can be classified into several subtypes based on their morphologies 2 , 15 . however , to date , there is no evidence that the morphological classification of amphioxus sensory cells corresponds with their functional classification . moreover , according to holland and holland 2 , it is not easy to detect their evolutionary affinities with those derived from placodes , ectodermal thickenings that produce population of neurons in vertebrate development 1 . it appears to be difficult to investigate the functional and evolutionary aspects of the identified epithelial sensory cells by morphological observations alone ; molecular markers , such as gene expressions , are necessary to characterize the epithelial sensory cells . although the results of some gene expression studies have been reported recently , the number of such studies is sparse . to date , elav 16 , coe 17 , trk 18 , hox1 , hox3 , hox4 , hox6 , err , and islet 19 genes are known to be expressed in the epithelial sensory cells . 16 examined the expression pattern of the pan - neuronal marker gene elav from early neurulae to 48-h larvae . elav expression possibly discloses most , if not all , of the nascent epithelial sensory cell population that becomes detectable in early neurulae . in the neurulae , the nascent epithelial sensory cell population was seen on the ventral side of the embryo . as development proceeded , signals became detectable in scattered cells located on the lateral sides of late neurulae . it is therefore intriguing to ask whether ventrally located cells in early neurulae migrate to the lateral sides of the embryo . dii labeling study has indicated that ventrally - located cells migrate towards lateral sides of the embryo 18 . in addition , based on the observation of coe - positive cells during development , mazet and colleagues 17 have discussed an evolutionary relationship between migrations of amphioxus epithelial sensory cells and vertebrate ectomesenchyme like neural crest - derived cells . however , explaining these observations do not always require a presumption that epithelial sensory cells of amphioxus can autonomously migrate during embryonic development . in my opinion , it is not hard to imagine that invagination of neuroectoderm that forms neural tube causes upward movement of the non - neural ectoderm , resulting in dorsal migration of ventrally - located epithelial sensory cell population . in order to address this issue , recent reports have highlighted the novel mechanism governing the development of amphioxus epithelial sensory cells . 19 reported that retinoic acid ( ra)-dependent anteroposterior patterning is relevant for the subdivision of epithelial sensory cells . in fact , collinear and segmental expression of hox genes has been observed not only in the neural tube 20 but also in the general ectoderm 19 . 18 isolated an amphioxus cognate of the trk receptor gene and examined its expression . according to their observations , amphitrk is expressed in both primary and secondary epithelial sensory cells , and this expression precedes that of elav . as elav is involved in neuronal differentiation such as axonal outgrowth 21 , 22 , the trk signaling system is likely involved in the early development of amphioxus epithelial sensory cells . interestingly , it seems that there are fewer amphitrk - positive cells than elav - positive cells . likewise , the number of cells that express amphicoe , a coe / ebf family gene with vertebrate counterparts involved in the placode - derived sensory cells , seems to be fewer than those expressing elav 17 . these findings suggest that the combinatorial code of developmental cues involving the hox code may subdivide amphioxus epithelial sensory cells as a whole into molecularly distinct subdomains . although the expression of these genes does not directly shed light on the functional aspects of the identified epithelial sensory cells , it is noteworthy that mice with mutated trk genes show defects in their mechanosensory cells 23 . furthermore , immunohistochemical research has indicated the existence of trk - like substances in the fish lateral line 24 , 25 . to gain insight into the functional modality of epithelial sensory cells of amphioxus , satoh 26 tried to characterize these cells based on the molecular phylogeny and expression of the g protein - coupled receptor ( gpcr ) genes . the gpcr family in vertebrates contains multiple copies of gustatory and olfactory receptor genes and photosensitive opsin genes . thus , identifying the amphioxus counterparts of these gpcr genes may be useful in disclosing the functions of the identified sensory neurons . it may even be possible to infer the causal relationship between the elaboration of sensory modalities and large - scale genomic duplication thought to have taken place in a lineage leading to the vertebrates 27 , 28 , 29 , 30 , although horton and colleagues proposed that molecular phylogenetic analyses are insufficient for dating genomic duplication events in the vertebrate phylogeny 31 . in particular , multiple copies of vertebrate olfactory receptor ( or ) genes are arrayed throughout the genome , yielding 100 genes in teleosts and 1000 genes in rodents 32 . each vertebrate olfactory sensory neuron selectively chooses only one allele of the receptor gene from a vast array of genes , and vertebrate ors predominantly lack introns . gentles and karlin 33 proposed that the mrna of an ancestral olfactory receptor gene was reverse - transcribed and incorporated in the genome , resulting in the early template of the intronless ors . an intronless gpcr gene found in the amphioxus genome showed weak sequence similarity to the vertebrate ors . although molecular phylogenetic analysis assigned this gene to a sister group of the vertebrate ors 26 , conclusive phylogenetic assignments should await genome - wide characterization of the amphioxus gpcr genes . in addition , there is no evidence of the existence of other gpcr genes located in close proximity to the intronless gpcr gene 26 . the ors of the zebrafish are evenly interspaced by about 1-kb non - coding regions 34 , suggesting that duplication of the olfactory - related gpcr genes may have occurred in a lineage leading to the vertebrates or gnathostomes . cdnas of lamprey ors have been characterized 35 , 36 , whereas the number of ors in the lamprey genome remains unknown ; more importantly , the genomic organization of the lamprey ors ( i.e. , whether they have introns or not ) remains to be investigated . for these reasons , it is so far impossible to date precisely the massive expansion of the ors in the vertebrate phylogeny . the expression of the amphioxus gpcr gene was seen in the bipolar neurons embedded within the rostral epithelium ( fig . if this expression domain correspond with a region thought to be comparable to the vertebrate nasal epithelium based on the larval expression of the pax6 37 , bmp2/4 38 , and msx 39 genes , the gpcr - positive bipolar neurons can be seen as chemosensory cell populations . taking neuroanatomical data into consideration , neurites of the gpcr - positive epithelial sensory cells seem to constitute a nerve fiber called the anterodorsal nerve . the anterodorsal nerve is composed of two major branches , the dorsal branch and ventral branch 15 . it is therefore possible that the dorsal and ventral branches respectively correspond to the dorsally located and ventrally located gpcr - positive cell populations ( fig . furthermore , there is another nerve located rostrally in relation to the anterodorsal nerve , the so - called rostral nerve . the rostral nerve terminates at the rostral tip , a gpcr - negative region ( fig . collectively , the rostral epithelium of amphioxus can be functionally subdivided into subdomains , and each peripheral nerve is likely to correspond to the regionalization of the epithelial sensory cells . however , it remains to address whether the regionalization seen in the rostral epithelium of amphioxus makes any sense in functional or evolutionary context . nevertheless , it is worth to note that the rostral epithelium of appendicularian , the earliest branch of the urochordates 41 , can be subdivided into molecularly distinct subdomains comparable to the vertebrate hypophyseal , olfactory , and otic placodes 42 , despite no molecular evidences of such regionalization in other tunicates like ascidians except for putative hypophyseal placode counterpart ( for review , see 43 ) . the photosensory cells of metazoans can be subdivided into two types , rhabdomeric cells and ciliary cells , based on their morphologies . molecular phylogenetic analysis has revealed that opsin genes can also be subdivided into two major types , rhabdomeric and ciliary opsins 44 ( fig . opsin proteins possess an evolutionarily conserved lysine residue , located on the seventh helix , that binds to the 11-cis - retinal to constitute visual pigments . rhabdomeric cells contain rhabdomeric opsins in their microvillar projections , whereas ciliary cells contain ciliary opsins in the discs formed by invagination of the cilium membrane . rhabdomeric cells are predominantly seen in invertebrate eyes , and there are no photosensory cells that can morphologically be regarded as rhabdomeric cells in vertebrates . nevertheless , it has found that the melanopsin gene , a vertebrate cognate of the rhabdomeric opsin gene , is expressed in photosensitive retinal ganglion cells ( rgcs ) 45 . furthermore , the cytodifferentiation of rgcs is regulated by the rx gene , similar to the regulation of invertebrate rhabdomeric cells 46 , 47 . these findings have led to speculation that the  missing  rhabdomeric cells of vertebrates may have survived as rgcs . although ciliary cells are well known as cones and rods in the vertebrate retina and photosensory cells of the pineal , some invertebrates such as ragworms 46 and amphioxus 48 , 49 , 50 , 51 also have both ciliary and rhabdomeric cells . it had been unknown whether invertebrates possess ciliary opsin genes closely related to those of the vertebrates , and , in fact , no ciliary opsin genes exist in the c. elegans and drosophila genomes 44 recently isolated a cognate of the ciliary opsin gene from ragworm , with expression seen in the ciliary cells . in addition , velarde et al . 52 and spaethe and briscoe 53 identified the ciliary opsin gene in honeybee and mosquito , respectively . these findings seem to support the idea that ancestral bilateria possessed both ciliary and rhabdomeric opsins and , accordingly , ciliary and rhabdomeric cells . in contrast , salvini - plawen and mayr 54 postulated that the photosensory cells of metazoans arose independently in phylogenies . to infer the evolutionary relationship between the photosensory cells of invertebrates and vertebrates , molecular phylogenetic analysis regarding amphioxus opsin genes is indispensable . it is particularly important to examine whether a ciliary and rhabodomeric dichotomy has been maintained even in the chordate lineage . 55 reported that the amphioxus counterpart of melanopsin , a rhabdomeric opsin , possesses a photochemical property that is quite similar to that of the invertebrate opsin gene and that its expression is seen in hesse 's eye cups and joseph cells , which clearly have rhabdomeric morphologies 48 , 51 . these results , together with the monophyly of the rhabdomeric opsin gene and the gq gene 44 , support a homology between vertebrate rgcs and invertebrate rhabdomeric cells , although this must be corroborated by developmental gene expression studies in the future . in contrast to that of the rhabdomeric cells , the evolutionary histories of ciliary cells and ciliary opsin genes appear to be more complex . molecular phylogenetic analysis has assigned amphiop5 as a ciliary opsin , whereas amphiop1 clustered with so - called go - coupled opsin ( fig . amphiop1 is expressed in the photosensory cells of larval frontal eye , while amphiop5 is expressed in the frontal eye of adults ( satoh et al . amphiop1 protein has been shown to bind to 11-cis - retinal 56 , suggesting that amphiop1 is involved in photodetection in the frontal eye of amphioxus larvae , which show diurnal vertical migration in the water column 57 . the go - coupled opsin gene of the scallop is also expressed in ciliary cells 58 , so that go - coupled opsin can be seen as a part of the ciliary opsin . consequently , ciliary opsin in broad sense is likely composed from two distinct evolutionary lineages . more importantly , the go - coupled opsin group is devoid of vertebrate counterparts , implying that go - coupled opsin became extinct in the vertebrate lineage . if so , highly diversified ciliary opsin genes in vertebrates have derived from very limited number of early templates via repeated gene duplication . in line with this notion , nordstrom and colleagues 59 postulated that the majority of the genes involved in the phototransduction pathways of vertebrates may have arisen by an extensive gene duplication event in early vertebrate evolution . taken together , an increase in the repertoire of phototransduction genes , including opsin , underlie the evolution of the functionally diverse ciliary cells seen in the vertebrate retina . as discussed above , the expression of gpcr genes appears to be a useful marker for disclosing the functional and evolutionary aspects of amphioxus sensory cells . a clear distinction between ciliary and rhabdomeric opsin genes across the bilaterian phylogeny suggests the possibility that the molecular phylogenetic classification of gpcr genes may agree with the functional and morphological classifications of amphioxus sensory cells in which gpcr genes are expressed . however , the molecular phylogeny of gpcr genes is complex and requires careful analysis because of the high substitution rates and the independent gain and loss of gpcr genes . for example , it is difficult to identify a clear evolutionary affinity between the chemosensory receptor genes of c. elegans and drosophila based on sequence comparisons 60 , suggesting that these genes have formed independently . it is possible that amphioxus has chemosensory receptor genes whose sequences are quite different from those of vertebrate ors or gustatory receptor genes . thus , in the post - genomic era , a comprehensive analysis of amphioxus gpcr genes will be necessary . in addition to the classification of the amphioxus gpcr genes as a whole based on molecular phylogenetic analysis , investigations of the genomic organization and expression analyses will also be required to determine the functional modalities of sensory cells and to date massive expansion of the gpcr genes in early vertebrate evolution . ( a ) schematic representation of the rostral structures of amphioxus , a dorsal view . adapted from 13 . note that oral cirri ( oc ) have been simplified . not ; notochord , nt ; neural tube , vt ; velar tentacle , wo ; wheel organ . ( b ) - ( d ) scanning electron micrographs showing body surface with numerous corolla - like structures of epithelial sensory cells ( b ) , velar tentacle with possible sensory apparatus called sensory papilla ( arrow ) ( c ) , and possible sensory apparatuses located on the lateral sides of each oral cirrus ( arrows ) ( d ) . scale bars respectively represent 25 m ( b ) and 10 m ( c ) . schematic representation showing expression of amphi - gpcr1 ( red ) in relation to peripheral nerves , the so - called anterodorsal nerve ( adn ) and rostral nerve ( rn ) . the anterodorsal nerve is composed of two major branches , a dorsal branch ( db ) and ventral branch ( vb ) 15 . molecular phylogenetic tree based on the maximum - likelihood method , showing the phylogenetic relationships of ciliary and go - coupled opsin proteins .