Does having an article retracted due to professor's ethical misconduct mean my career is over? When I was in my first year of M.Sc. a professor told me to work on a project for which the main data belonged to him. He had sent me an early draft and told me to translate it into English, so I did along with recalculations and adding some stuff to the paper. We sent the article to a journal and got published there. But a year later the journal contacted me because of a duplication based on a conference proceeding with the professor's name and another student which was from 3 years before this. 

As of this moment the journal retracted the article, they didn't charge me guilty at all in my university but they fired the prof because he had multiple other misconducts before that. 

Is this the end of my academic career? I am trying to apply for a PhD, does this mean no one will ever accept me?
What should I do when I was not even guilty but yet there has been a retraction based on this issue? 

I might really be overthinking this, but I am really scared that nowhere accepts me for future studies.

UPDATE: 
Thank you all for answering my question. 

Unfortunately, I live in a dictatorial country in the middle east. 
I have told the department head of our faculty but he doesn't AT ALL. 
I have told my supervisor he said I am sorry but nothing we can do in this situation. I have talked to an attorney he said in a country such as ours that copyright is not a thing these cases don't matter. 

I have applied for multiple PhD job positions in European countries but I got rejected from most of them.
If I understand your description, there is no finding of academic misconduct against you.  You have co-authorship of a retracted article, where the problem appears to have been caused by the misconduct of your co-author, and unbeknownst to you.  The incident occurred when you were only a masters student acting under the direction of a professor.  If this description is accurate, I do not see why this matter would affect your future research career.  I cannot imagine this being held against you by a selection panel for PhD candidature, or later in your career.

To ensure you have evidence confirming your account of events, I would strongly recommend asking the university to give you a formal written finding describing the matter and confirming that you did not commit academic misconduct.  You should also ask them for a letter of reference that gives an account of your abilities, with an apology to you for misconduct of this professor.  Bear in mind that the university employed the professor that instructed you in this matter, so they bear some responsibility to you here, and you have some good leverage to get them to give you a formal exoneration.  If you have trouble getting them to give you this, I would recommend speaking to a solicitor to look at your options.  By taking you on as a student the university had a responsibility to you, and it is responsible if its employee harms your research work through his misconduct.

The academic journal has no corresponding obligation to you, so what I would recommend here is to get your formal exoneration letter from the university and then send it to the journal.  Ask them to append a description to their retraction (the online version) noting that you were not responsible for any misconduct in this matter.