Project management techniques applied to research Are there books/writing on project management as applied to scientific research (for PhD students and higher)?

I am looking for something synonymous to Scott Berkun's "Making Things Happen", which was written for software developers.
Other interesting and useful practices I am familiar with include Agile and Extreme Programming. Maybe I am looking for sources on comparing research process to product development.

Just to be clear, this is not question about software, but about practices.
A number of things spring to mind.  The first is communication of goals and time lines, and I'd just point to Gantt and PERT charts.  Each has advantages and disadvantages, but the key is to make sure that everyone knows and understands what needs to be done, when it needs to be done by, and who is responsible for what.

The second is the amorphous management trees that come up in research environments.  A great discussion and treatment of this is in Project Management, by Heerkens -- https://www.amazon.com/Project-Management-Second-Briefcase-Books/dp/0071818480.  It doesn't  speak to research, but projects in general, and a project is a project.  I really like his treatment of the "accidental manager", where you find yourself in a position of responsibility managing people who you have no real control or influence over.