FastQCFastQC Report
Mon 8 Jul 2024
MEF_H3K36me3_IP_T2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMEF_H3K36me3_IP_T2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7464078
Sequences flagged as poor quality0
Sequence length36
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN242530.324929616223196No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN92580.12403407359890933No Hit
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN89460.11985405297211525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)