"-linking <n>  report regions with linking read coverage greater than <n>\n" "-singlemate <n> report regions with singleton mate coverage > than <n>\n"
void printHelpText(){  cerr <<     "\n"    ".NAME.\n"    "asmQC - computes several mate-pair based statistics on an assembly\n"    "\n.USAGE.\n"    "asmQC -b[ank] <bank_name>\n"    "\n.OPTIONS.\n"    "-h, -help     print out help message\n"    "-b, -bank     bank where assembly is stored\n"    "-feat         write contig features into the bank\n"    "-recompute    recompute library sizes\n"    "-update       update bank with recomputed library sizes\n"    "-minobs <n>   minimum number of good mate-pairs required to recompute\n"    "              library sizes\n"    "-numsd <n>    mate-pairs within <n> standard deviations of the mean\n"    "              library size are considered good. <n> can be fractional\n"    "-goodcvg <n>  report regions with good mate coverage less than <n>\n"    "-shortcvg <n> report regions with short mate coverage greater than <n>\n"    "-longcvg <n>  report regions with long mate coverage greater than <n>\n"    "-samecvg <n>  report regions with coverage by mates with same orientation\n"    "              greater than <n>\n"    "-outiecvg <n> report regions with outie coverage greater than <n>\n"    "-perinsert <file> output per-insert information in <file>\n"    "-meachange <n> libraries whose mean changed by less than <n> will be considered unchanged\n"    "-sdchange <n> libraries whose stdev. changed by less than <n> will be considered unchanged\n"    "-debug        output status for each mate-pair to STDERR\n"    "\n.DESCRIPTION.\n"    "\n.KEYWORDS.\n"    "AMOS bank, Validation, Mate pairs\n"       << endl;}