tigger.graph->create_dot_file("test2.dot");
tigger.graph->create_dot_file("fullgraph.dot"); tigger.output_contig_graphs();
int main(int argc, char** argv) {  parse_command_line(argc, argv);  if(AMOS_mode) {    if(tigger.VERBOSE) {      cout << " AMOS mode " << endl;      cout << " use bank: " << bankdir << endl;    }    get_amos_reads(bankdir);    get_amos_overlaps(bankdir);    tigger.calc_contigs();    tigger.output_amos_contigs(bankdir);  } else if(UMD_mode) {    cout << " UMD mode " << endl;    cout << "\t get reads from: " << read_file << endl;    cout << "\t get overlaps from: " << overlap_file << endl;  } else {    cout << " Error with inputs, no mode was set" << endl;  }  if(GRAPH) {    tigger.graph->create_dot_file("test2.dot");  }}