WOL(At2g01830): global treeFile name: WOL.njtree0.svg240 aa residues 70 OTU included.Results of 1 partial trees included.Smo_WOL_8_1, Smo_WOL_11_1、AAS78641[Oryza sativa] Assemble Job Id: 34gvbITree job id: IkSTxoBP values out of 100Analyzed by ku-bo@nibb.ac.jpDate: Tue May 30 10:48:42 JST 2006
AT2G01830 = NP_849925 NP_973396 NP_565277 CAC18521 CAC18522 CAC18523 BAB40776 AAD21777 ABB83393 Receiver Vector p415-CYC1-CRE1a-SSRE-GFP ABB83397 Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP WOL (CYTOKININ RESPONSE 1)/WOL (CYTOKININ RESPONSE 1) /BAB33310 Arabidopsis thaliana BAB33311 cytokinin receptor CRE1a/cytokinin receptor CRE1b100
CAF31355 Cucurbita maxima putative histidine kinase99
XP_469566 Oryza sativa (japonica cultivar-group) AAO38834 putative histidine kinase/putative histidine kinaseBAE80689 Zea mays histidine kinase
95 BAE80687 Zea mays BAE80688 histidine kinase/histidine kinase100
BAB20583 Zea mays histidine kinase 1
BAE80686 Zea mays histidine kinase48
XP_467688 Oryza sativa (japonica cultivar-group) BAD16039 putative histidine kinase 1/putative histidine kinase 1100
BAD01584 Zea mays histidine kinase 2  →AAS78641Oryza sativa 
ABB76249 Oryza sativa (indica cultivar-group) hybrid type histidine kinase
95 XP_463649 Oryza sativa (japonica cultivar-group) BAD88305 BAD88327 putative histidine kinase/putative histidine kinase 2 /putative histidine kinase 2100
ABD79028 Striga asiatica histidine kinase SHK278
AT1G27320 = NP_564276 AAF99730 BAB40775 AHK3 (ARABIDOPSIS HISTIDINE KINASE 3)/F17L21.11 /histidine kinase56
Smo_WOL_1_1
Smo_WOL_5_1100
Smo_WOL_37_2→Smo_WOL_8_1  →Smo_WOL_11_199
Ppa_WOL_3_1
Ppa_WOL_87_1 ABD49495 Physcomitrella patens cytokinin receptor 2
Ppa_WOL_34_1 ABD49494 Physcomitrella patens92100
NP_921024 Oryza sativa (japonica cultivar-group) AAM18726 AAP53311 putative histidine kinase/putative histidine kinase /histidine kinase, putative
BAD01585 Zea mays BAD01586 histidine kinase 3/histidine kinase 3100
AAM14700 Catharanthus roseus cytokinin receptor
AT5G35750 = NP_568532 BAB40774 AAO00890 AAP37766 AHK2 (ARABIDOPSIS HISTIDINE KINASE 2)/histidine kinase /histidine kinase-like protein /At5g357509928
Ppa_WOL_47_1
Ppa_WOL_26_1Ppa_WOL_63_1100100
NP_755227 Escherichia coli CFT073 NP_289340 Escherichia coli O157:H7 EDL933 ZP_00714910 Escherichia coli B7A AP_003352 Escherichia coli W3110 ZP_00725643 Escherichia coli F11 ZP_00718437 Escherichia coli E110019 YP_409032 Shigella boydii SbNP_461879 Salmonella typhimurium LT2 YP_217885 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 AAF34823 Salmonella typhimurium AAL21838 Salmonella typhimurium LT2 AAX66804 Salmonella enterica subsp. enterica serovar Cholera
100 NP_806563 Salmonella enterica subsp. enterica serovar Typhi Ty2 NP_457354 Salmonella enterica subsp. enterica serovar Typhi str. CT18 YP_151985 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 AI0860 Salmonella enterica subs100
ZP_01090668 Blastopirellula marina DSM 3645 EAQ80514 FOG: CheY-like receiver/FOG: CheY-like receiverNP_902313 Chromobacterium violaceum ATCC 12472 AAQ60313 probable sensor/response regulator hybrid /probable sensor/response regulator hybrid
ZP_00607777 Magnetococcus sp. MC-1 EAN27799 PAS/PAS
ZP_00753663 Vibrio cholerae RC385 COG0642: Signal transduction histidine kinaseZP_00745934 Vibrio cholerae V52 NP_230993 Vibrio cholerae O1 biovar eltor str. N16961 ZP_00759029 Vibrio cholerae MO10 ZP_00756171 Vibrio cholerae O395 ZP_00750537 Vibrio cholerae V51 AAF94507 Vibrio cholerae O1 biovar eltor str. N16961 COG10024
ZP_00608513 Magnetococcus sp. MC-1 EAN27061 PAS/PAS
NP_441312 Synechocystis sp. PCC 6803 BAA17992 hybrid sensory kinase/hybrid sensory kinase
ZP_00055969 Magnetospirillum magnetotacticum MS-1 COG0642: Signal transduction histidine kinase
YP_423509 Magnetospirillum magneticum AMB-1 BAE52950 Signal transduction histidine kinase/Signal transduction histidine kinase100100
YP_286658 Dechloromonas aromatica RCB AAZ48188 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt/Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase,
ZP_00849349 Shewanella sp. ANA-3 EAP21013 PAS/PASZP_00882182 Shewanella sp. MR-4 ZP_00855004 Shewanella sp. MR-7 EAP23642 EAP46058 Shewanella sp. MR-4 PAS/PAS /PAS /PAS97
ZP_00583064 Shewanella baltica OS155 EAN42495 PAS/PAS100
ZP_00836597 Shewanella sp. PV-4 EAP03455 PAS/PAS100
ZP_00658601 Nocardioides sp. JS614 EAO06596 PAS/PAS
ZP_00660379 Nocardioides sp. JS614 EAO04824 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal/Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
ZP_00659124 Nocardioides sp. JS614 EAO06092 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal/Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal6968
ZP_01091085 Blastopirellula marina DSM 3645 EAQ80186 Response regulator receiver:ATP-binding region,ATPase-like:Histidine kinase A, N-terminal:Hpt/Response regulator receiver:ATP-binding region,ATPase-like:Histidine kinase A, N-terminal:Hpt
ZP_00678575 Pelobacter propionicus DSM 2379 EAO35790 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt/Response regulator receiver:ATP-binding region, ATPase-like:Histidine ki27
YP_463125 Syntrophus aciditrophicus SB ABC78957 signal transduction histidine kinase/signal transduction histidine kinase
ZP_00601697 Rubrobacter xylanophilus DSM 9941 EAN35240 PAS/PAS
ZP_00600877 Rubrobacter xylanophilus DSM 9941 EAN36092 PAS/PAS10025
YP_527960 Saccharophagus degradans 2-40 ABD81748 Ribosomal-protein-alanine acetyltransferase/Ribosomal-protein-alanine acetyltransferase
YP_476201 Synechococcus sp. JA-3-3Ab ABD00938 sensory box histidine kinase/response regulator /sensory box histidine kinase/response regulator
YP_476763 Synechococcus sp. JA-2-3B'a(2-13) ABD01500 sensory box histidine kinase/response regulator /sensory box histidine kinase/response regulator10021
ZP_00527745 Chlorobium phaeobacteroides DSM 266 EAM35872 PAS/PAS
YP_113669 Methylococcus capsulatus str. Bath AAP80772 Methylococcus capsulatus AAU92711 Methylococcus capsulatus str. Bath sensory box histidine kinase/response regulator /MmoS /sensory box histidine kinase/response regulator
ZP_00244380 Rubrivivax gelatinosus PM1 COG0642: Signal transduction histidine kinase
AAQ18202 uncultured bacterium hypothetical protein csv01210010
ZP_01090362 Blastopirellula marina DSM 3645 EAQ81194 ammonium/methylammonium permease /ammonium/methylammonium permease
YP_423098 Magnetospirillum magneticum AMB-1 BAE52539 Signal transduction histidine kinase/Signal transduction histidine kinase
YP_422801 Magnetospirillum magneticum AMB-1 BAE52242 Sensor protein gacS/Sensor protein gacSZP_00054895 Magnetospirillum magnetotacticum MS-1 COG0642: Signal transduction histidine kinase10010019
ZP_01023574 Polaromonas naphthalenivorans CJ2 EAQ17932 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt/Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt
YP_475076 Synechococcus sp. JA-3-3Ab ABC99813 sensory box histidine kinase/response regulator /sensory box histidine kinase/response regulator
NP_440376 Synechocystis sp. PCC 6803 BAA17056 hybrid sensory kinase/hybrid sensory kinase
ZP_00105980 Nostoc punctiforme PCC 73102 COG2202: FOG: PAS/PAC domain
ZP_00674598 Trichodesmium erythraeum IMS101 EAO26705 PAS/PAS86487420
YP_470639 Rhizobium etli CFN 42 ABC91912 probable two-component sensor histidine kinase/response regulator hybrid protein /probable two-component sensor histidine kinase/response regulator hybrid protein
Smo_WOL_20_225
AAO59549.1¦ [Oryza sativa (indica cultivar-group)](identical to ABB76249)AAO59548.1¦ [Oryza sativa (indica cultivar-group)](identical to ABB76249)AAK13126.1¦ [Oryza sativa (japonica cultivar-group)](identical to NP_921024) Ppa WOL 16 1 (identical to ABD49495 Pp cytokinin receptor 2)BAB09274.1¦ [Arabidopsis thaliana] (identical to AT5G35750)AAY32330.1¦ [Phyllostachys praecox]were removed from this tree.
Comments
result of bl2seq(blastN) of Ppa WOL 16 1  and ABD49495 PpCRE2 Score =  464 bits (241),  Expect = 1e-126Identities = 241/241 (100%), Gaps = 0/241 (0%)Score =  421 bits (219),  Expect = 6e-114Identities = 219/219 (100%), Gaps = 0/219 (0%)Score =  339 bits (176),  Expect = 5e-89Identities = 176/176 (100%), Gaps = 0/176 (0%)
result of bl2seq(blastN) of AAO59549 and ABB76249 Score = 2861 bits (1488),  Expect = 0.0Identities = 1492/1494 (99%), Gaps = 0/1494 (0%)
result of bl2seq(blastN) of AAO59548 and ABB76249 Score = 2809 bits (1461),  Expect = 0.0Identities = 1465/1467 (99%), Gaps = 0/1467 (0%)
result of bl2seq(blastN) of AAK13126 and NP_921024Score = 2552 bits (1327),  Expect = 0.0Identities = 1327/1327 (100%), Gaps = 0/1327 (0%)
result of bl2seq(blastN) of Smo_WOL_11_1 and Smo_WOL_8_1No signiﬁcant similarity was found
result of bl2seq(blastN) of Smo_WOL_11_1 and Smo_WOL_37_2No signiﬁcant similarity was found
result of bl2seq(blastN) of Smo_WOL_8_1 and Smo_WOL_37_2No signiﬁcant similarity was found
result of bl2seq(blastN) of XP_463649 and ABB76249Score = 5614 bits (2920),  Expect = 0.0Identities = 2956/2967 (99%), Gaps = 0/2967 (0%)Score = 79.5 bits (41),  Expect = 6e-11Identities = 41/41 (100%), Gaps = 0/41 (0%
result of bl2seq(blastN) of BAE80686 and BAB20583Score = 4480 bits (2330),  Expect = 0.0Identities = 2720/2915 (93%), Gaps = 0/2915 (0%)
these two sequences have internal stop codons in a conserved region and judged as pseudogenes