MemBuilder supports four different force fields optimized for molecular simulation of lipids including GROMOS96 43a1 (van Gunsteren et al., 1996), GROMOS96 43a1-S3 (Chiu et al., 2009; Pandit et al., 2008), GROMOS96 53a6 (Oostenbrink et al., 2004) and Slipid/amber (Jambeck and Lyubartsev, 2012a, b, c).
Sample text:```(orb), egl, and BicD (Costa et al., 2005; Mach and Lehmann, 1997; Suter and Steward, 1991).```
Sample intent: method
Sample text:```We screened for potential TF binding sites using STAMP [59], with the motifs’ position weight matrices (PWMs) retrieved from the TRANSFAC database [60].```
Sample intent: background



Sample text:```1996) and then to the effector enzyme, namely phospholipase C-b 2 (PLC-b 2) (Adler et al. 2000).```
Sample intent: method



Sample text:```(orb), egl, and BicD (Costa et al., 2005; Mach and Lehmann, 1997; Suter and Steward, 1991).```
Sample intent: method



Sample text:```The GITT model performs better than an empirical lag-time model [17], however, its predicted profiles tend to underestimate Cmax, which, if consistent, may suggest confounding systematic bias or invalid assumptions.```
Sample intent: background



Sample text:```Our genealogy, based on many alleles but only the first exon of bindin, is not entirely consistent with that of McCartney and Lessios (2004), based on fewer alleles but incorporating the entire molecule.```
Sample intent: result
Sample text:```A number of studies have been published recently, which analyze the location, orientation, and identity ofmacromolecular complexes, based on the outcome of template-matching (Brandt et al., 2009; Ortiz et al., 2010).```
Sample intent: method



Sample text:```3, top) was constructed from the previously described 0.85-kb promoter construct (construct 6, Drews et al. 2005) by digestion with AscI and MluI followed by religation.```
Sample intent: method



Sample text:```Because previous studies indicated that hexapeptides bind the junction core (29, 32), we tested two junctions, one with an AT-rich core and the other with a GC-rich core (Fig.```
Sample intent: result



Sample text:```We screened for potential TF binding sites using STAMP [59], with the motifs’ position weight matrices (PWMs) retrieved from the TRANSFAC database [60].```
Sample intent: background



Sample text:```(orb), egl, and BicD (Costa et al., 2005; Mach and Lehmann, 1997; Suter and Steward, 1991).```
Sample intent: method



Sample text:```In this study, we generalized previous results regarding the quasi-Gaussian shape and the scalar property using the SBF model [13,21,52].```
Sample intent: result



Sample text:```Discrepancies analogous to those between our results and those of simulations have, indeed, recently been observed in the case of the binary perceptron [18], the pspin interaction spin glass [19], and in the case of fluctuating manifolds in random media [20], where dynamically frozen phases were observed in regions of parameter space in which static approaches yielded ergodic phases.```
Sample intent: result



Sample text:```The GITT model performs better than an empirical lag-time model [17], however, its predicted profiles tend to underestimate Cmax, which, if consistent, may suggest confounding systematic bias or invalid assumptions.```
Sample intent: background



Sample text:```Illustra PuReTaq ReadyTo-Go PCR beads (0.5 ml tubes, GE healthcare) were used to amplify DTL, SLFN5, TRIM47, WRAP53 and CHN1 transcripts (denaturing at 94uC for 30 s, annealing at 58uC for 1 min and elongation at 72uC for 2 min, 25‚Äì35 cycles).```
Sample intent: background



Sample text:```LASTZ represents a new implementation of the previous BLASTZ (30) algorithm and includes several improvements (29).```
Sample intent: background