--- task_categories: - image-classification tags: - butterfly - heliconius - dorsal - ventral - RGB - full body - separated wings - mimicry - CV pretty_name: Jiggins Heliconius Collection size_categories: - 10K ### Supported Tasks and Leaderboards [More Information Needed] ### Languages [More Information Needed] ## Dataset Structure * **Jiggins_Zenodo_Img_Master.csv:** Information for the approximately 49,0000 unprocessed image files included in the Jiggins Heliconius Collection. Image types are `jpg`, `raw` (.CR2) and `tif`. `genus`, `species`, and `subspecies` are included columns. * To access the images combine columns `zenodo_link` and `Image_name`: ``` zenodo_link + '/files/' + Image_name ``` * **Jiggins_Zenodo_dorsal_Img_Master.csv:** Subset of 24,318 images from `Jiggins_Zenodo_Img_Master.csv` with a dorsal view of the butterflies (note that some have both dorsal and ventral). This subset includes 12,296 unique specimens. Accessing the images from Zenodo works the same as above, and image types are `jpg`, `raw` (.CR2) and `tif`. * **Jiggins_Heliconius_Master.csv:** The 34,929-image subset of all Heliconius images from `Jiggins_Zenodo_Img_Master.csv`. This subset includes 9,546 unique specimens. Accessing the images from Zenodo works the same as above, and image types are `jpg`, `raw` (.CR2) and `tif`. `species` and `subspecies` columns are also included. * Note: The notebooks that generated these files and stats are included in the `notebooks` folder. ### Data Instances `Jiggins_Heliconius_Master.csv` contains multiple species of Heliconius (including erato and melpomene), most are labeled down to the subspecies level. The `Jiggins_Zenodo_Img_Master.csv` also contains species from other genera, with just over half labeled to the subspecies level (these are predominantly Heliconius subspecies). Detached wings in four quadrants (generally). Some subspecies may be photographed differently, needs segmentation preprocessing. * **Type:** JPG/jpg/tif(very few) * **Size (x pixels by y pixels):** Unknown yet * **Background (color or none):** multiple (needs to be normalized) * **Fit in frame:** * **Ruler or Scale:** Some with Ruler * **Color (ColorChecker, white-balance, None):** None #### Preprocessing steps (to be done): 1. Hybrid separation - some images labeled as _H. erato_ and _H. melpomene_ without subspecies names are hybrids and need to be determined what subspecies they are. 2. Label correction - along with step 1. 3. Removal of subspecies with no mimic pairs. 4. Segmentation of four wings from images so we can focus on forewings vs hindwings: [WingSeg](https://github.com/agporto/WingSeg). Current preprocessing steps: [WingSeg](https://github.com/agporto/WingSeg) on the [Meier subset](https://huggingface.co/datasets/imageomics/Meier-Subset-Jiggins/). ### Data Fields [More Information Needed] ### Data Splits [More Information Needed] ## Dataset Creation ### Curation Rationale [More Information Needed] ### Source Data These images are a subset of the [Butterfly Genetics Group's Cambridge butterfly collection](https://zenodo.org/communities/butterfly?q=&f=subject%3ACambridge&l=list&p=1&s=10&sort=newest). This collection of butterfly images comes from the research group of Chris Jiggins at the University of Cambridge derived from almost 20 years of field studies. Data is pulled from the Zenodo Records in [`licenses.json`](https://huggingface.co/datasets/imageomics/Jiggins_Heliconius_Collection/blob/main/licenses.json). This file also contains full citation information for all records. #### Initial Data Collection and Normalization [More Information Needed] #### Who are the source language producers? [More Information Needed] ### Annotations #### Annotation process [More Information Needed] #### Who are the annotators? [More Information Needed] ### Personal and Sensitive Information None ## Considerations for Using the Data ### Social Impact of Dataset [More Information Needed] ### Discussion of Biases [More Information Needed] ### Other Known Limitations [More Information Needed] ## Additional Information ### Dataset Curators * Christopher Lawrence (Princeton University) - ORCID: 0000-0002-3846-5968 * Chris Jiggins (University of Cambridge) - ORCID: 0000-0002-7809-062X * Butterfly Genetics Group (University of Cambridge) ### Licensing Information The data (images and text) are all licensed under [Creative Commons Attribution 4.0 International](https://creativecommons.org/licenses/by/4.0/). Each image and text in this dataset is provided under the least restrictive terms allowed by its licensing requirements as provided to us (i.e, we impose no additional restrictions past those specified by this license on the original source files). Modified images are only restricted by this original license. Images can be matched to their source record through the `zenodo_link` column in the Master CSVs to the `url` in the licenses.json file. ### Citation Information Christopher Lawrence, Chris Jiggins, Butterfly Genetics Group (University of Cambridge). (2023). Jiggins Heliconius Collection. Hugging Face. https://huggingface.co/datasets/imageomics/Jiggins_Heliconius_Collection. If you use this dataset, please cite the original datasets (citations for all 32 Zenodo records are in licenses.json) as well as this curated subset. ### Contributions The [Imageomics Institute](https://imageomics.org) is funded by the US National Science Foundation's Harnessing the Data Revolution (HDR) Institute program under [Award #2118240](https://www.nsf.gov/awardsearch/showAward?AWD_ID=2118240) (Imageomics: A New Frontier of Biological Information Powered by Knowledge-Guided Machine Learning).