"""simple docstring"""

import sacrebleu as scb
from packaging import version
from sacrebleu import TER

import datasets


UpperCAmelCase       =  """\\n@inproceedings{snover-etal-2006-study,\n    title = \"A Study of Translation Edit Rate with Targeted Human Annotation\",\n    author = \"Snover, Matthew  and\n      Dorr, Bonnie  and\n      Schwartz, Rich  and\n      Micciulla, Linnea  and\n      Makhoul, John\",\n    booktitle = \"Proceedings of the 7th Conference of the Association for Machine Translation in the Americas: Technical Papers\",\n    month = aug # \" 8-12\",\n    year = \"2006\",\n    address = \"Cambridge, Massachusetts, USA\",\n    publisher = \"Association for Machine Translation in the Americas\",\n    url = \"https://aclanthology.org/2006.amta-papers.25\",\n    pages = \"223--231\",\n}\n@inproceedings{post-2018-call,\n    title = \"A Call for Clarity in Reporting {BLEU} Scores\",\n    author = \"Post, Matt\",\n    booktitle = \"Proceedings of the Third Conference on Machine Translation: Research Papers\",\n    month = oct,\n    year = \"2018\",\n    address = \"Belgium, Brussels\",\n    publisher = \"Association for Computational Linguistics\",\n    url = \"https://www.aclweb.org/anthology/W18-6319\",\n    pages = \"186--191\",\n}\n"""

UpperCAmelCase       =  """\\nTER (Translation Edit Rate, also called Translation Error Rate) is a metric to quantify the edit operations that a\nhypothesis requires to match a reference translation. We use the implementation that is already present in sacrebleu\n(https://github.com/mjpost/sacreBLEU#ter), which in turn is inspired by the TERCOM implementation, which can be found\nhere: https://github.com/jhclark/tercom.\n\nThe implementation here is slightly different from sacrebleu in terms of the required input format. The length of\nthe references and hypotheses lists need to be the same, so you may need to transpose your references compared to\nsacrebleu's required input format. See https://github.com/huggingface/datasets/issues/3154#issuecomment-950746534\n\nSee the README.md file at https://github.com/mjpost/sacreBLEU#ter for more information.\n"""

UpperCAmelCase       =  """\nProduces TER scores alongside the number of edits and reference length.\n\nArgs:\n    predictions (list of str): The system stream (a sequence of segments).\n    references (list of list of str): A list of one or more reference streams (each a sequence of segments).\n    normalized (boolean): If `True`, applies basic tokenization and normalization to sentences. Defaults to `False`.\n    ignore_punct (boolean): If `True`, applies basic tokenization and normalization to sentences. Defaults to `False`.\n    support_zh_ja_chars (boolean): If `True`, tokenization/normalization supports processing of Chinese characters,\n                                    as well as Japanese Kanji, Hiragana, Katakana, and Phonetic Extensions of Katakana.\n                                    Only applies if `normalized = True`. Defaults to `False`.\n    case_sensitive (boolean): If `False`, makes all predictions and references lowercase to ignore differences in case. Defaults to `False`.\n\nReturns:\n    'score' (float): TER score (num_edits / sum_ref_lengths * 100)\n    'num_edits' (int): The cumulative number of edits\n    'ref_length' (float): The cumulative average reference length\n\nExamples:\n    Example 1:\n        >>> predictions = [\"does this sentence match??\",\n        ...                     \"what about this sentence?\",\n        ...                     \"What did the TER metric user say to the developer?\"]\n        >>> references = [[\"does this sentence match\", \"does this sentence match!?!\"],\n        ...             [\"wHaT aBoUt ThIs SeNtEnCe?\", \"wHaT aBoUt ThIs SeNtEnCe?\"],\n        ...             [\"Your jokes are...\", \"...TERrible\"]]\n        >>> ter = datasets.load_metric(\"ter\")\n        >>> results = ter.compute(predictions=predictions,\n        ...                         references=references,\n        ...                         case_sensitive=True)\n        >>> print(results)\n        {'score': 150.0, 'num_edits': 15, 'ref_length': 10.0}\n\n    Example 2:\n        >>> predictions = [\"does this sentence match??\",\n        ...                     \"what about this sentence?\"]\n        >>> references = [[\"does this sentence match\", \"does this sentence match!?!\"],\n        ...             [\"wHaT aBoUt ThIs SeNtEnCe?\", \"wHaT aBoUt ThIs SeNtEnCe?\"]]\n        >>> ter = datasets.load_metric(\"ter\")\n        >>> results = ter.compute(predictions=predictions,\n        ...                         references=references,\n        ...                         case_sensitive=True)\n        >>> print(results)\n        {'score': 62.5, 'num_edits': 5, 'ref_length': 8.0}\n\n    Example 3:\n        >>> predictions = [\"does this sentence match??\",\n        ...                     \"what about this sentence?\"]\n        >>> references = [[\"does this sentence match\", \"does this sentence match!?!\"],\n        ...             [\"wHaT aBoUt ThIs SeNtEnCe?\", \"wHaT aBoUt ThIs SeNtEnCe?\"]]\n        >>> ter = datasets.load_metric(\"ter\")\n        >>> results = ter.compute(predictions=predictions,\n        ...                         references=references,\n        ...                         normalized=True,\n        ...                         case_sensitive=True)\n        >>> print(results)\n        {'score': 57.14285714285714, 'num_edits': 6, 'ref_length': 10.5}\n\n    Example 4:\n        >>> predictions = [\"does this sentence match??\",\n        ...                     \"what about this sentence?\"]\n        >>> references = [[\"does this sentence match\", \"does this sentence match!?!\"],\n        ...             [\"wHaT aBoUt ThIs SeNtEnCe?\", \"wHaT aBoUt ThIs SeNtEnCe?\"]]\n        >>> ter = datasets.load_metric(\"ter\")\n        >>> results = ter.compute(predictions=predictions,\n        ...                         references=references,\n        ...                         ignore_punct=True,\n        ...                         case_sensitive=False)\n        >>> print(results)\n        {'score': 0.0, 'num_edits': 0, 'ref_length': 8.0}\n\n    Example 5:\n        >>> predictions = [\"does this sentence match??\",\n        ...                    \"what about this sentence?\",\n        ...                    \"What did the TER metric user say to the developer?\"]\n        >>> references = [[\"does this sentence match\", \"does this sentence match!?!\"],\n        ...             [\"wHaT aBoUt ThIs SeNtEnCe?\", \"wHaT aBoUt ThIs SeNtEnCe?\"],\n        ...             [\"Your jokes are...\", \"...TERrible\"]]\n        >>> ter = datasets.load_metric(\"ter\")\n        >>> results = ter.compute(predictions=predictions,\n        ...                         references=references,\n        ...                         ignore_punct=True,\n        ...                         case_sensitive=False)\n        >>> print(results)\n        {'score': 100.0, 'num_edits': 10, 'ref_length': 10.0}\n"""







@datasets.utils.file_utils.add_start_docstrings(_DESCRIPTION			,							_KWARGS_DESCRIPTION)
class      UpperCAmelCase_       (						datasets.Metric):






							def       _UpperCamelCase			(		self :      Tuple  )       ->       str:





												if version.parse(scb.__version__  ) < version.parse('''1.4.12'''  ):
																	raise ImportWarning(
																	    '''To use `sacrebleu`, the module `sacrebleu>=1.4.12` is required, and the current version of `sacrebleu` doesn\'t match this condition.\n'''
																	    '''You can install it with `pip install "sacrebleu>=1.4.12"`.'''  )
												return datasets.MetricInfo(
												    description=_DESCRIPTION     ,						citation=_CITATION     ,						homepage='''http://www.cs.umd.edu/~snover/tercom/'''     ,						inputs_description=_KWARGS_DESCRIPTION     ,						features=datasets.Features(
												        {
												            '''predictions''': datasets.Value('''string'''     ,						id='''sequence'''  ),
												            '''references''': datasets.Sequence(datasets.Value('''string'''     ,						id='''sequence'''  )     ,						id='''references'''  ),
												        }  )     ,						codebase_urls=['''https://github.com/mjpost/sacreBLEU#ter''']     ,						reference_urls=[
												        '''https://github.com/jhclark/tercom''',
												    ]     ,						)






							def       _UpperCamelCase			(		self :      Any     ,						__UpperCamelCase :      List[Any]     ,						__UpperCamelCase :      str     ,						__UpperCamelCase :      Tuple = False     ,						__UpperCamelCase :      Optional[int] = False     ,						__UpperCamelCase :      List[Any] = False     ,						__UpperCamelCase :      int = False     ,						)       ->       Optional[Any]:
												_UpperCamelCase      						=	len(references[0]  )
												if any(len(A_  ) != references_per_prediction for refs in references  ):
																	raise ValueError('''Sacrebleu requires the same number of references for each prediction'''  )
												_UpperCamelCase      						=	[[refs[i] for refs in references] for i in range(A_  )]

												_UpperCamelCase      						=	TER(
												    normalized=A_     ,						no_punct=A_     ,						asian_support=A_     ,						case_sensitive=A_     ,						)
												_UpperCamelCase      						=	sb_ter.corpus_score(A_     ,						A_  )

												return {"score": output.score, "num_edits": output.num_edits, "ref_length": output.ref_length}



from typing import Dict

import numpy as np
import torch

from . import residue_constants as rc
from .tensor_utils import tensor_tree_map, tree_map







def 		_lowercase (     lowercase__						):
      __lowerCAmelCase					:						str					=					[]
      __lowerCAmelCase					:						List[Any]					=					[]
      __lowerCAmelCase					:						str					=					[]

      for rt in rc.restypes:
            __lowerCAmelCase					:						List[Any]					=					rc.restype_name_to_atomaa_names[rc.restype_atoa[rt]]
            restype_atomaa_to_atomaa_list.append([(rc.atom_order[name] if name else 0) for name in atom_names]						)
            __lowerCAmelCase					:						List[str]					=					{name: i for i, name in enumerate(lowercase__						)}
            restype_atomaa_to_atomaa_list.append(
                [(atom_name_to_idxaa[name] if name in atom_name_to_idxaa else 0) for name in rc.atom_types]						)

            restype_atomaa_mask_list.append([(1.0 if name else 0.0) for name in atom_names]						)

      # Add dummy mapping for restype 'UNK'
      restype_atomaa_to_atomaa_list.append([0] * 1_4						)
      restype_atomaa_to_atomaa_list.append([0] * 3_7						)
      restype_atomaa_mask_list.append([0.0] * 1_4						)

      __lowerCAmelCase					:						List[Any]					=					torch.tensor(
          lowercase__   ,	dtype=torch.intaa   ,	device=protein['''aatype'''].device   ,	)
      __lowerCAmelCase					:						Optional[Any]					=					torch.tensor(
          lowercase__   ,	dtype=torch.intaa   ,	device=protein['''aatype'''].device   ,	)
      __lowerCAmelCase					:						Tuple					=					torch.tensor(
          lowercase__   ,	dtype=torch.floataa   ,	device=protein['''aatype'''].device   ,	)
      __lowerCAmelCase					:						List[Any]					=					protein['''aatype'''].to(torch.long						)

      # create the mapping for (residx, atom14) --> atom37, i.e. an array
      # with shape (num_res, 14) containing the atom37 indices for this protein
      __lowerCAmelCase					:						Any					=					restype_atomaa_to_atomaa[protein_aatype]
      __lowerCAmelCase					:						Union[str, Any]					=					restype_atomaa_mask[protein_aatype]

      __lowerCAmelCase					:						int					=					residx_atomaa_mask
      __lowerCAmelCase					:						List[str]					=					residx_atomaa_to_atomaa.long()

      # create the gather indices for mapping back
      __lowerCAmelCase					:						int					=					restype_atomaa_to_atomaa[protein_aatype]
      __lowerCAmelCase					:						Union[str, Any]					=					residx_atomaa_to_atomaa.long()

      # create the corresponding mask
      __lowerCAmelCase					:						str					=					torch.zeros([2_1, 3_7]   ,	dtype=torch.floataa   ,	device=protein['''aatype'''].device						)
      for restype, restype_letter in enumerate(rc.restypes						):
            __lowerCAmelCase					:						Optional[int]					=					rc.restype_atoa[restype_letter]
            __lowerCAmelCase					:						Optional[Any]					=					rc.residue_atoms[restype_name]
            for atom_name in atom_names:
                  __lowerCAmelCase					:						str					=					rc.atom_order[atom_name]
                  __lowerCAmelCase					:						List[Any]					=					1

      __lowerCAmelCase					:						Union[str, Any]					=					restype_atomaa_mask[protein_aatype]
      __lowerCAmelCase					:						Any					=					residx_atomaa_mask

      return protein







def 		_lowercase (     lowercase__						):
      __lowerCAmelCase					:						Dict					=					tree_map(lambda lowercase__						: torch.tensor(lowercase__   ,	device=batch['''aatype'''].device						)   ,	lowercase__   ,	np.ndarray						)
      __lowerCAmelCase					:						Tuple					=					tensor_tree_map(lambda lowercase__						: np.array(lowercase__						)   ,	make_atomaa_masks(lowercase__						)						)
      return out


