split DUD-E into smaller partitions
Browse files- .gitattributes +814 -0
- dude_combine.py +2 -2
.gitattributes
CHANGED
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@@ -1,2 +1,816 @@
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| 1 |
data/all.parquet filter=lfs diff=lfs merge=lfs -text
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| 2 |
data/dude.parquet filter=lfs diff=lfs merge=lfs -text
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| 1 |
data/all.parquet filter=lfs diff=lfs merge=lfs -text
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| 2 |
data/dude.parquet filter=lfs diff=lfs merge=lfs -text
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| 3 |
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data filter=lfs diff=lfs merge=lfs -text
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| 4 |
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data/dude/ filter=lfs diff=lfs merge=lfs -text
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| 5 |
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data/dude/part.788.parquet filter=lfs diff=lfs merge=lfs -text
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| 6 |
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data/dude/part.129.parquet filter=lfs diff=lfs merge=lfs -text
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| 7 |
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data/dude/part.158.parquet filter=lfs diff=lfs merge=lfs -text
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| 8 |
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data/dude/part.196.parquet filter=lfs diff=lfs merge=lfs -text
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| 9 |
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data/dude/part.217.parquet filter=lfs diff=lfs merge=lfs -text
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| 10 |
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data/dude/part.482.parquet filter=lfs diff=lfs merge=lfs -text
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| 11 |
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data/dude/part.544.parquet filter=lfs diff=lfs merge=lfs -text
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| 12 |
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data/dude/part.699.parquet filter=lfs diff=lfs merge=lfs -text
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data/dude/part.7.parquet filter=lfs diff=lfs merge=lfs -text
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data/dude/part.546.parquet filter=lfs diff=lfs merge=lfs -text
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data/dude/part.608.parquet filter=lfs diff=lfs merge=lfs -text
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data/dude/part.762.parquet filter=lfs diff=lfs merge=lfs -text
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data/dude/part.264.parquet filter=lfs diff=lfs merge=lfs -text
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data/dude/part.281.parquet filter=lfs diff=lfs merge=lfs -text
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data/dude/part.330.parquet filter=lfs diff=lfs merge=lfs -text
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data/dude/part.154.parquet filter=lfs diff=lfs merge=lfs -text
|
| 664 |
+
data/dude/part.172.parquet filter=lfs diff=lfs merge=lfs -text
|
| 665 |
+
data/dude/part.223.parquet filter=lfs diff=lfs merge=lfs -text
|
| 666 |
+
data/dude/part.354.parquet filter=lfs diff=lfs merge=lfs -text
|
| 667 |
+
data/dude/part.379.parquet filter=lfs diff=lfs merge=lfs -text
|
| 668 |
+
data/dude/part.401.parquet filter=lfs diff=lfs merge=lfs -text
|
| 669 |
+
data/dude/part.538.parquet filter=lfs diff=lfs merge=lfs -text
|
| 670 |
+
data/dude/part.706.parquet filter=lfs diff=lfs merge=lfs -text
|
| 671 |
+
data/dude/part.575.parquet filter=lfs diff=lfs merge=lfs -text
|
| 672 |
+
data/dude/_metadata filter=lfs diff=lfs merge=lfs -text
|
| 673 |
+
data/dude/part.232.parquet filter=lfs diff=lfs merge=lfs -text
|
| 674 |
+
data/dude/part.308.parquet filter=lfs diff=lfs merge=lfs -text
|
| 675 |
+
data/dude/part.319.parquet filter=lfs diff=lfs merge=lfs -text
|
| 676 |
+
data/dude/part.445.parquet filter=lfs diff=lfs merge=lfs -text
|
| 677 |
+
data/dude/part.48.parquet filter=lfs diff=lfs merge=lfs -text
|
| 678 |
+
data/dude/part.553.parquet filter=lfs diff=lfs merge=lfs -text
|
| 679 |
+
data/dude/part.599.parquet filter=lfs diff=lfs merge=lfs -text
|
| 680 |
+
data/dude/part.613.parquet filter=lfs diff=lfs merge=lfs -text
|
| 681 |
+
data/dude/part.246.parquet filter=lfs diff=lfs merge=lfs -text
|
| 682 |
+
data/dude/part.316.parquet filter=lfs diff=lfs merge=lfs -text
|
| 683 |
+
data/dude/part.397.parquet filter=lfs diff=lfs merge=lfs -text
|
| 684 |
+
data/dude/part.433.parquet filter=lfs diff=lfs merge=lfs -text
|
| 685 |
+
data/dude/part.8.parquet filter=lfs diff=lfs merge=lfs -text
|
| 686 |
+
data/dude/part.610.parquet filter=lfs diff=lfs merge=lfs -text
|
| 687 |
+
data/dude/part.157.parquet filter=lfs diff=lfs merge=lfs -text
|
| 688 |
+
data/dude/part.320.parquet filter=lfs diff=lfs merge=lfs -text
|
| 689 |
+
data/dude/part.414.parquet filter=lfs diff=lfs merge=lfs -text
|
| 690 |
+
data/dude/part.519.parquet filter=lfs diff=lfs merge=lfs -text
|
| 691 |
+
data/dude/part.528.parquet filter=lfs diff=lfs merge=lfs -text
|
| 692 |
+
data/dude/part.537.parquet filter=lfs diff=lfs merge=lfs -text
|
| 693 |
+
data/dude/part.598.parquet filter=lfs diff=lfs merge=lfs -text
|
| 694 |
+
data/dude/part.736.parquet filter=lfs diff=lfs merge=lfs -text
|
| 695 |
+
data/dude/part.806.parquet filter=lfs diff=lfs merge=lfs -text
|
| 696 |
+
data/dude/part.204.parquet filter=lfs diff=lfs merge=lfs -text
|
| 697 |
+
data/dude/part.300.parquet filter=lfs diff=lfs merge=lfs -text
|
| 698 |
+
data/dude/part.309.parquet filter=lfs diff=lfs merge=lfs -text
|
| 699 |
+
data/dude/part.325.parquet filter=lfs diff=lfs merge=lfs -text
|
| 700 |
+
data/dude/part.633.parquet filter=lfs diff=lfs merge=lfs -text
|
| 701 |
+
data/dude/part.676.parquet filter=lfs diff=lfs merge=lfs -text
|
| 702 |
+
data/dude/part.245.parquet filter=lfs diff=lfs merge=lfs -text
|
| 703 |
+
data/dude/part.359.parquet filter=lfs diff=lfs merge=lfs -text
|
| 704 |
+
data/dude/part.423.parquet filter=lfs diff=lfs merge=lfs -text
|
| 705 |
+
data/dude/part.242.parquet filter=lfs diff=lfs merge=lfs -text
|
| 706 |
+
data/dude/part.258.parquet filter=lfs diff=lfs merge=lfs -text
|
| 707 |
+
data/dude/part.342.parquet filter=lfs diff=lfs merge=lfs -text
|
| 708 |
+
data/dude/part.625.parquet filter=lfs diff=lfs merge=lfs -text
|
| 709 |
+
data/dude/part.72.parquet filter=lfs diff=lfs merge=lfs -text
|
| 710 |
+
data/dude/part.259.parquet filter=lfs diff=lfs merge=lfs -text
|
| 711 |
+
data/dude/part.329.parquet filter=lfs diff=lfs merge=lfs -text
|
| 712 |
+
data/dude/part.474.parquet filter=lfs diff=lfs merge=lfs -text
|
| 713 |
+
data/dude/part.616.parquet filter=lfs diff=lfs merge=lfs -text
|
| 714 |
+
data/dude/part.659.parquet filter=lfs diff=lfs merge=lfs -text
|
| 715 |
+
data/dude/part.759.parquet filter=lfs diff=lfs merge=lfs -text
|
| 716 |
+
data/dude/part.796.parquet filter=lfs diff=lfs merge=lfs -text
|
| 717 |
+
data/dude/part.703.parquet filter=lfs diff=lfs merge=lfs -text
|
| 718 |
+
data/dude/part.91.parquet filter=lfs diff=lfs merge=lfs -text
|
| 719 |
+
data/dude/part.511.parquet filter=lfs diff=lfs merge=lfs -text
|
| 720 |
+
data/dude/part.200.parquet filter=lfs diff=lfs merge=lfs -text
|
| 721 |
+
data/dude/part.229.parquet filter=lfs diff=lfs merge=lfs -text
|
| 722 |
+
data/dude/part.231.parquet filter=lfs diff=lfs merge=lfs -text
|
| 723 |
+
data/dude/part.352.parquet filter=lfs diff=lfs merge=lfs -text
|
| 724 |
+
data/dude/part.35.parquet filter=lfs diff=lfs merge=lfs -text
|
| 725 |
+
data/dude/part.369.parquet filter=lfs diff=lfs merge=lfs -text
|
| 726 |
+
data/dude/part.372.parquet filter=lfs diff=lfs merge=lfs -text
|
| 727 |
+
data/dude/part.531.parquet filter=lfs diff=lfs merge=lfs -text
|
| 728 |
+
data/dude/part.704.parquet filter=lfs diff=lfs merge=lfs -text
|
| 729 |
+
data/dude/part.110.parquet filter=lfs diff=lfs merge=lfs -text
|
| 730 |
+
data/dude/part.577.parquet filter=lfs diff=lfs merge=lfs -text
|
| 731 |
+
data/dude/part.649.parquet filter=lfs diff=lfs merge=lfs -text
|
| 732 |
+
data/dude/part.711.parquet filter=lfs diff=lfs merge=lfs -text
|
| 733 |
+
data/dude/part.800.parquet filter=lfs diff=lfs merge=lfs -text
|
| 734 |
+
data/dude/part.122.parquet filter=lfs diff=lfs merge=lfs -text
|
| 735 |
+
data/dude/part.279.parquet filter=lfs diff=lfs merge=lfs -text
|
| 736 |
+
data/dude/part.311.parquet filter=lfs diff=lfs merge=lfs -text
|
| 737 |
+
data/dude/part.335.parquet filter=lfs diff=lfs merge=lfs -text
|
| 738 |
+
data/dude/part.728.parquet filter=lfs diff=lfs merge=lfs -text
|
| 739 |
+
data/dude/part.755.parquet filter=lfs diff=lfs merge=lfs -text
|
| 740 |
+
data/dude/part.657.parquet filter=lfs diff=lfs merge=lfs -text
|
| 741 |
+
data/dude/part.102.parquet filter=lfs diff=lfs merge=lfs -text
|
| 742 |
+
data/dude/part.15.parquet filter=lfs diff=lfs merge=lfs -text
|
| 743 |
+
data/dude/part.333.parquet filter=lfs diff=lfs merge=lfs -text
|
| 744 |
+
data/dude/part.42.parquet filter=lfs diff=lfs merge=lfs -text
|
| 745 |
+
data/dude/part.510.parquet filter=lfs diff=lfs merge=lfs -text
|
| 746 |
+
data/dude/part.513.parquet filter=lfs diff=lfs merge=lfs -text
|
| 747 |
+
data/dude/part.640.parquet filter=lfs diff=lfs merge=lfs -text
|
| 748 |
+
data/dude/part.692.parquet filter=lfs diff=lfs merge=lfs -text
|
| 749 |
+
data/dude/part.715.parquet filter=lfs diff=lfs merge=lfs -text
|
| 750 |
+
data/dude/part.87.parquet filter=lfs diff=lfs merge=lfs -text
|
| 751 |
+
data/dude/part.803.parquet filter=lfs diff=lfs merge=lfs -text
|
| 752 |
+
data/dude/part.109.parquet filter=lfs diff=lfs merge=lfs -text
|
| 753 |
+
data/dude/part.27.parquet filter=lfs diff=lfs merge=lfs -text
|
| 754 |
+
data/dude/part.36.parquet filter=lfs diff=lfs merge=lfs -text
|
| 755 |
+
data/dude/part.436.parquet filter=lfs diff=lfs merge=lfs -text
|
| 756 |
+
data/dude/part.450.parquet filter=lfs diff=lfs merge=lfs -text
|
| 757 |
+
data/dude/part.569.parquet filter=lfs diff=lfs merge=lfs -text
|
| 758 |
+
data/dude/part.652.parquet filter=lfs diff=lfs merge=lfs -text
|
| 759 |
+
data/dude/part.235.parquet filter=lfs diff=lfs merge=lfs -text
|
| 760 |
+
data/dude/part.255.parquet filter=lfs diff=lfs merge=lfs -text
|
| 761 |
+
data/dude/part.261.parquet filter=lfs diff=lfs merge=lfs -text
|
| 762 |
+
data/dude/part.674.parquet filter=lfs diff=lfs merge=lfs -text
|
| 763 |
+
data/dude/part.732.parquet filter=lfs diff=lfs merge=lfs -text
|
| 764 |
+
data/dude/part.163.parquet filter=lfs diff=lfs merge=lfs -text
|
| 765 |
+
data/dude/part.214.parquet filter=lfs diff=lfs merge=lfs -text
|
| 766 |
+
data/dude/part.396.parquet filter=lfs diff=lfs merge=lfs -text
|
| 767 |
+
data/dude/part.467.parquet filter=lfs diff=lfs merge=lfs -text
|
| 768 |
+
data/dude/part.521.parquet filter=lfs diff=lfs merge=lfs -text
|
| 769 |
+
data/dude/part.527.parquet filter=lfs diff=lfs merge=lfs -text
|
| 770 |
+
data/dude/part.615.parquet filter=lfs diff=lfs merge=lfs -text
|
| 771 |
+
data/dude/part.612.parquet filter=lfs diff=lfs merge=lfs -text
|
| 772 |
+
data/dude/part.103.parquet filter=lfs diff=lfs merge=lfs -text
|
| 773 |
+
data/dude/part.201.parquet filter=lfs diff=lfs merge=lfs -text
|
| 774 |
+
data/dude/part.291.parquet filter=lfs diff=lfs merge=lfs -text
|
| 775 |
+
data/dude/part.468.parquet filter=lfs diff=lfs merge=lfs -text
|
| 776 |
+
data/dude/part.472.parquet filter=lfs diff=lfs merge=lfs -text
|
| 777 |
+
data/dude/part.514.parquet filter=lfs diff=lfs merge=lfs -text
|
| 778 |
+
data/dude/part.552.parquet filter=lfs diff=lfs merge=lfs -text
|
| 779 |
+
data/dude/part.677.parquet filter=lfs diff=lfs merge=lfs -text
|
| 780 |
+
data/dude/part.128.parquet filter=lfs diff=lfs merge=lfs -text
|
| 781 |
+
data/dude/part.16.parquet filter=lfs diff=lfs merge=lfs -text
|
| 782 |
+
data/dude/part.256.parquet filter=lfs diff=lfs merge=lfs -text
|
| 783 |
+
data/dude/part.347.parquet filter=lfs diff=lfs merge=lfs -text
|
| 784 |
+
data/dude/part.44.parquet filter=lfs diff=lfs merge=lfs -text
|
| 785 |
+
data/dude/part.565.parquet filter=lfs diff=lfs merge=lfs -text
|
| 786 |
+
data/dude/part.184.parquet filter=lfs diff=lfs merge=lfs -text
|
| 787 |
+
data/dude/part.303.parquet filter=lfs diff=lfs merge=lfs -text
|
| 788 |
+
data/dude/part.340.parquet filter=lfs diff=lfs merge=lfs -text
|
| 789 |
+
data/dude/part.490.parquet filter=lfs diff=lfs merge=lfs -text
|
| 790 |
+
data/dude/part.543.parquet filter=lfs diff=lfs merge=lfs -text
|
| 791 |
+
data/dude/part.604.parquet filter=lfs diff=lfs merge=lfs -text
|
| 792 |
+
data/dude/part.266.parquet filter=lfs diff=lfs merge=lfs -text
|
| 793 |
+
data/dude/part.452.parquet filter=lfs diff=lfs merge=lfs -text
|
| 794 |
+
data/dude/part.51.parquet filter=lfs diff=lfs merge=lfs -text
|
| 795 |
+
data/dude/part.66.parquet filter=lfs diff=lfs merge=lfs -text
|
| 796 |
+
data/dude/part.682.parquet filter=lfs diff=lfs merge=lfs -text
|
| 797 |
+
data/dude/part.18.parquet filter=lfs diff=lfs merge=lfs -text
|
| 798 |
+
data/dude/part.351.parquet filter=lfs diff=lfs merge=lfs -text
|
| 799 |
+
data/dude/part.435.parquet filter=lfs diff=lfs merge=lfs -text
|
| 800 |
+
data/dude/part.459.parquet filter=lfs diff=lfs merge=lfs -text
|
| 801 |
+
data/dude/part.570.parquet filter=lfs diff=lfs merge=lfs -text
|
| 802 |
+
data/dude/part.642.parquet filter=lfs diff=lfs merge=lfs -text
|
| 803 |
+
data/dude/part.734.parquet filter=lfs diff=lfs merge=lfs -text
|
| 804 |
+
data/dude/part.124.parquet filter=lfs diff=lfs merge=lfs -text
|
| 805 |
+
data/dude/part.166.parquet filter=lfs diff=lfs merge=lfs -text
|
| 806 |
+
data/dude/part.218.parquet filter=lfs diff=lfs merge=lfs -text
|
| 807 |
+
data/dude/part.463.parquet filter=lfs diff=lfs merge=lfs -text
|
| 808 |
+
data/dude/part.740.parquet filter=lfs diff=lfs merge=lfs -text
|
| 809 |
+
data/dude/part.98.parquet filter=lfs diff=lfs merge=lfs -text
|
| 810 |
+
data/dude/part.153.parquet filter=lfs diff=lfs merge=lfs -text
|
| 811 |
+
data/dude/part.534.parquet filter=lfs diff=lfs merge=lfs -text
|
| 812 |
+
data/dude/part.573.parquet filter=lfs diff=lfs merge=lfs -text
|
| 813 |
+
data/dude/part.634.parquet filter=lfs diff=lfs merge=lfs -text
|
| 814 |
+
data/dude/part.638.parquet filter=lfs diff=lfs merge=lfs -text
|
| 815 |
+
data/dude/part.713.parquet filter=lfs diff=lfs merge=lfs -text
|
| 816 |
+
data/dude/part.82.parquet filter=lfs diff=lfs merge=lfs -text
|
dude_combine.py
CHANGED
|
@@ -6,5 +6,5 @@ if __name__ == '__main__':
|
|
| 6 |
filenames = glob.glob('DUDE/all/*/ligands.parquet')
|
| 7 |
|
| 8 |
ddf = dd.read_parquet(filenames)
|
| 9 |
-
|
| 10 |
-
|
|
|
|
| 6 |
filenames = glob.glob('DUDE/all/*/ligands.parquet')
|
| 7 |
|
| 8 |
ddf = dd.read_parquet(filenames)
|
| 9 |
+
ddf = ddf.repartition(partition_size='1M')
|
| 10 |
+
ddf.to_parquet('data/dude')
|