Parameterizing Geodesics on the Sphere in Polar Coordinates I seem to have this seemingly trivial Problem, but can't figure it out.
Situation: 
I have my Unit Sphere, $S^2$ defined as a Riemannian Manifold. Parameterizing Geodesics (Great circles) on this sphere is absolutely no Problem, IF I embed it in $\mathbb{R}^3$. BUT, I don't want to do this. 
What I really want to do, is use riemannian polar coordinates. Now genereally, this isn't a problem, as I could just take any point on the geodesic and call it $(0,0)$ (with $(r,\varphi)$ being my riemannian polar coordinates). And all the lines going through the origin would be my great circles.
However, The origin of the exponential map I'm using does not lie on the geodesic of interest. I do however know 2 points (say $P_1, P_2$) and their polar coordinates.
So basically, I have $\text{exp}_p^{-1} : S^2\to \mathbb{R}^2$ and my two points in $\mathbb{R}^2$ defined by $(r_1,\varphi_1)$ and $(r_2,\varphi_2)$. 
I'm looking for some parameterisation to connect these two points via a great circle. And I just can't think of anything sensible.
Any help would be highly appreciated. 
Edit: To clarify, I have a working method using an $\mathbb{R}^3$ embedding, but it's very bulky and "unpretty". 
Further, I'm using this geodesic to "bound" one of my integrals and shifting the Origin is therefore not an option

Why don't you just use spherical trigonometry? You have a "base triangle" with vertices $O$, $A_1$ and $A_2$, sides $O A_i$ of length $r_i$ and an angle $\alpha:=|\phi_2-\phi_1|$ between them. Now consider an arbitrary point $P$ on the third side $A_1 A_2$. The "line" $OP\ $ has length $r$ and encloses angles $\alpha_i$ with the sides  $OA_i$. The formulas of spherical trigonometry will give you an equation connecting $r$ and the $\alpha_i$.
Let $s_i$ be the lengths of the sides $A_i P$. Then
$$\cos s_i=\cos r_i \cos r +\sin r_i \sin r \cos\alpha_i\qquad(i=1,2)$$
and
$$\cos(s_1+s_2)=\cos r_1\cos r_2+\sin r_1\sin r_2 \cos(\alpha_1+\alpha_2)\ .$$
Eliminate $s_1$ and $s_2$ from these three equations to get the desired result. Hint: Square the identity $\sin s_1 \sin s_2=\cos s_1 \cos s_2-\cos(s_1+s_2)$ and replace $\sin^2 s_i$ by $1-\cos^2 s_i$.
