If a Fourier Transform is continuous in frequency, then what are the "harmonics"? The basic idea of a Fourier series is that you use integer multiples of some fundamental frequency to represent any time domain signal.

Ok, so if the Fourier Transform (Non periodic, continuous in time, or non periodic, discrete in time) results in a continuum of frequencies, then uh, is there no fundamental frequency / concept of using integer multiples of some fundamental frequency?

In order to talk about a fundamental frequency, you need a fundamental period. But the Fourier transform deals with integrable functions ($L^1$, or $L^2$ if you go further in the theory) defined on the whole real line, and they are not periodic (except the zero function).
