Upload 13 files

.gitattributes

@@ -56,3 +56,6 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 # Video files - compressed
 *.mp4 filter=lfs diff=lfs merge=lfs -text
 *.webm filter=lfs diff=lfs merge=lfs -text
+data/HCP-438k.tsv filter=lfs diff=lfs merge=lfs -text
+data/NS-290k.tsv filter=lfs diff=lfs merge=lfs -text
+data/PD1-46k.tsv filter=lfs diff=lfs merge=lfs -text

conf/dev/Dockerfile

@@ -0,0 +1,5 @@
+# serve the data with busybox
+FROM busybox:1.36.1
+RUN adduser -D static
+USER static
+WORKDIR /home/static

conf/dev/docker-compose.yml

@@ -0,0 +1,23 @@
+name: bike-dataset-dev
+
+services:
+  ds:
+    build:
+      context: ../../
+      dockerfile: ./conf/dev/Dockerfile
+    container_name: bike-ds
+    working_dir: /home/static
+    command: busybox httpd -f -v -p 28256
+    environment:
+      NODE_ENV: dev
+    volumes:
+      - ../../data:/home/static/dataset
+    ports:
+      - 28256:28256
+    restart: always
+    networks:
+      - bikenet
+
+networks:
+  bikenet:
+    driver: bridge

conf/medviz/Dockerfile

@@ -0,0 +1,5 @@
+# serve the data with busybox
+FROM busybox:1.36.1
+RUN adduser -D static
+USER static
+WORKDIR /home/static

conf/medviz/docker-compose.yml

@@ -0,0 +1,23 @@
+name: bike-dataset
+
+services:
+  ds:
+    build:
+      context: ../../
+      dockerfile: ./conf/medviz/Dockerfile
+    container_name: bike-ds
+    working_dir: /home/static
+    command: busybox httpd -f -v -p 28256
+    environment:
+      NODE_ENV: medviz
+    volumes:
+      - ../../data:/home/static/dataset
+    ports:
+      - 28256:28256
+    restart: always
+    networks:
+      - bikenet
+
+networks:
+  bikenet:
+    driver: bridge

conf/spinup/Dockerfile

@@ -0,0 +1,5 @@
+# serve the data with busybox
+FROM busybox:1.36.1
+RUN adduser -D static
+USER static
+WORKDIR /home/static

conf/spinup/docker-compose.yml

@@ -0,0 +1,23 @@
+name: bike-dataset-dev
+
+services:
+  ds:
+    build:
+      context: ../../
+      dockerfile: ./conf/spinup/Dockerfile
+    container_name: bike-ds
+    working_dir: /home/static
+    command: busybox httpd -f -v -p 28256
+    environment:
+      NODE_ENV: spinup
+    volumes:
+      - ../../data:/home/static/dataset
+    ports:
+      - 28256:28256
+    restart: always
+    networks:
+      - bikenet
+
+networks:
+  bikenet:
+    driver: bridge

data/HCP-438k.json

@@ -0,0 +1,23 @@
+{
+    "dataset_id": "HCP-438k",
+    "type": "PRE_GENERATED",
+    "status": "COMPLETED",
+    "datetime_created": "2024-08-01",
+    "datetime_updated": "2024-08-01",
+
+    "title": "High Impact Papers",
+    "description": "Publications with high citations indexed by PubMed",
+
+    "final_dataset": {
+        "points_tsv": "/dataset/HCP-438k.tsv",
+        "topics_json": "/dataset/PD1-46k.topics.json"
+    },
+
+    "config": {
+        "color_scale": "by_year_cate",
+        "size_scale": "by_size_attribute",
+
+        "color_legend": [
+        ]
+    }
+}

data/HCP-438k.tsv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:17e1eeb531f1a907f994c6671e5353a602163d7ff05f1c2bb0f8774e23dc75a3
+size 179810649

data/NS-290k.json

@@ -0,0 +1,23 @@
+{
+    "dataset_id": "NS-290k",
+    "type": "PRE_GENERATED",
+    "status": "COMPLETED",
+    "datetime_created": "2024-08-01",
+    "datetime_updated": "2024-08-01",
+
+    "title": "Nature & Science 100 Years",
+    "description": "Publications from Nature and Science in the past 100 years",
+
+    "final_dataset": {
+        "points_tsv": "/dataset/NS-290k.tsv",
+        "topics_json": ""
+    },
+
+    "config": {
+        "color_scale": "by_year_cate",
+        "size_scale": "by_size_attribute",
+
+        "color_legend": [
+        ]
+    }
+}

data/NS-290k.tsv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:cb14fdf61718d96cf1dcbfa32ad249a2d827a8cf8a35d299e87a4a8c3c8ce5dc
+size 153264958

data/PD1-46k.json

@@ -0,0 +1,35 @@
+{
+    "dataset_id": "PD1-46k",
+    "type": "PRE_GENERATED",
+    "status": "COMPLETED",
+    "datetime_created": "2024-08-01",
+    "datetime_updated": "2024-08-01",
+    
+    "title": "PD1 & PD-L1",
+    "description": "This dataset contains the data of PD-1 and PD-L1 studies.",
+
+    "final_dataset": {
+        "points_tsv": "/dataset/PD1-46k.tsv",
+        "topics_json": "/dataset/PD1-46k.topics.json"
+    },
+
+    "config": {
+        "color_scale": "by_year_cate",
+        "size_scale": "by_size_attribute",
+
+        "color_legend": [
+            {
+                "color": "#ff0000",
+                "label": "PD-1"
+            },
+            {
+                "color": "#00ff00",
+                "label": "PD-L1"
+            },
+            {
+                "color": "#0000ff",
+                "label": "PD-L2"
+            }
+        ]
+    }
+}

data/PD1-46k.tsv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:40a3916f4e1beea5d058ed39138e8876d2a8a5124fc51aca229cdb2d8fab005c
+size 19792397