I am interested in finding a database that takes a gene or protein name as input (possibly with the option to specify transcript) and gives information about the protein's functional domains in terms of either specific residue ranges, genomic coordinates, etc. Ideally, the database would include 3D conformational information as well as the functional domains. Does such a database exist? It seems that this information can be inferred for a given protein using various publications and references but I have yet to find a single collection containing these data all in one place.
Do any publicly available databases detail protein structure and functional domains?
database;gene;proteins;protein structure;rna structure
Some of this information (at least some domains, active sites, etc) is available from UniProt.If you want to download their whole database, you can search without specifying any terms and then click the Download button.