We have made some links nofollow in recent weeks, but they are still showing up in Google Webmaster Tools. Does GWT ignore these links? Will they vanish as the index is updated, or do even nofollow links show up here?
Does Google Webmaster Tools show nofollow links in 'Links to your site'?
seo;google search console
Simple answer: Yes, GWT shows all links, followed and nofollowed.