I would like to extract all the CDS from a batch of genomes. I have found a perl script from BioStars but this does not seem to work for me. I would preferably like to have a script/ method which will use the locus tag as a header.ExampleMy gff files are from prokka outputATCC0000    Prodigal:2.6    CDS 243 434 .   +   0   ID=FKKLIMLP_00001;Parent=FKKLIMLP_00001_gene;inference=ab initio prediction:Prodigal:2.6;locus_tag=FKKLIMLP_00001;product=hypothetical proteinATCC0000    prokka  gene    243 434 .   +   .   ID=FKKLIMLP_00001_gene;locus_tag=FKKLIMLP_00001ATCC0000    Prodigal:2.6    CDS 1727    2131    .   -   0   ID=FKKLIMLP_00002;Parent=FKKLIMLP_00002_gene;inference=ab initio prediction:Prodigal:2.6;locus_tag=FKKLIMLP_00002;product=hypothetical protein
How to extract / convert gff3 CDS sequences to multifasta
fasta;software recommendation;format conversion;gff3