I'm currently developing a program that determines protein structure, and I'm in need of creating a kind of profile for each amino acid. I've tried searching over the past several months (here and there), but haven't been able to find any such library (the programming language doesn't matter). I'm specifically looking for something along the lines of an adjacency (bond) matrix for each atom within an amino acid, and in particular which atom within the amino acid attaches to the protein backbone.I should also specify that in the adjacency (bond) matrix, I am only concerned with T/F values. Which is to say, I don't care for the bond length to be stored in the matrix, just the information of if two atoms are connected by a bond, denoted with a TRUE or FALSE value. If you're interested in seeing some details on how my algorithm works, I'm basing a great deal of my calculatory procedures on the research done by Carlile Lavor. See here for the publication I frequently reference.
Looking for an amino acid library
protein structure;public databases