The whole situation with her memories about her parents baffled Hermione the most. Why did she have so many different options? In the other altered memories, she was only given a single alternate version of the facts. Why then did she see multiple with her parents? It only caused her head to pound in agony when she tried to figure out the logistics of it all. Antonin claimed that they'd spent the Christmas holiday with her parents only months before she ran away. If that was the case, when did she have those memories altered? She couldn't remember seeing Rodolphus during that time.