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README.md

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+---
+language: rna
+tags:
+  - Biology
+  - RNA
+license:
+  - agpl-3.0
+size_categories:
+  - 10M<n<100M
+source_datasets:
+  - multimolecule/5srrnadb
+  - multimolecule/crw
+  - multimolecule/dictybase
+  - multimolecule/ena
+  - multimolecule/ensembl
+  - multimolecule/ensembl_fungi
+  - multimolecule/ensembl_gencode
+  - multimolecule/ensembl_metazoa
+  - multimolecule/ensembl_plants
+  - multimolecule/ensembl_protists
+  - multimolecule/evlncrnas
+  - multimolecule/expression_atlas
+  - multimolecule/flybase
+  - multimolecule/genecards
+  - multimolecule/greengenes
+  - multimolecule/gtrnadb
+  - multimolecule/hgnc
+  - multimolecule/intact
+  - multimolecule/lncbase
+  - multimolecule/lncbook
+  - multimolecule/lncipedia
+  - multimolecule/lncrnadb
+  - multimolecule/malacards
+  - multimolecule/mgi
+  - multimolecule/mgnify
+  - multimolecule/mirbase
+  - multimolecule/mirgenedb
+  - multimolecule/modomics
+  - multimolecule/noncode
+  - multimolecule/pdbe
+  - multimolecule/pirbase
+  - multimolecule/plncdb
+  - multimolecule/pombase
+  - multimolecule/psicquic
+  - multimolecule/rdp
+  - multimolecule/refseq
+  - multimolecule/rfam
+  - multimolecule/rgd
+  - multimolecule/ribocentre
+  - multimolecule/ribovision
+  - multimolecule/sgd
+  - multimolecule/silva
+  - multimolecule/snodb
+  - multimolecule/snopy
+  - multimolecule/snorna_database
+  - multimolecule/srpdb
+  - multimolecule/tair
+  - multimolecule/tarbase
+  - multimolecule/tmrna_website
+  - multimolecule/wormbase
+  - multimolecule/zfin
+  - multimolecule/zwd
+task_categories:
+  - text-generation
+  - fill-mask
+task_ids:
+  - language-modeling
+  - masked-language-modeling
+pretty_name: RNAcentral
+library_name: multimolecule
+---
+
+# RNAcentral
+
+![RNAcentral](https://rnacentral.org/static/img/expert-databases.png)
+
+RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of [Expert Databases](https://rnacentral.org/expert-databases) representing a broad range of organisms and RNA types.
+
+The development of RNAcentral is coordinated by [European Bioinformatics Institute](http://www.ebi.ac.uk/) and is supported by [Wellcome](https://wellcome.ac.uk/). Initial funding was provided by [BBSRC](https://bbsrc.ukri.org/).
+
+## Disclaimer
+
+This is an UNOFFICIAL release of the [RNAcentral](https://rnacentral.org) by The RNAcentral Consortium.
+
+**The team releasing RNAcentral did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.**
+
+## Dataset Description
+
+- **Homepage**: https://rnacentral.org
+- **Documentation**: https://multimolecule.danling.org/datasets/rnacentral
+- **datasets**: https://huggingface.co/datasets/multimolecule/rnacentral
+- **Point of Contact**: [Blake Sweeney](https://www.ebi.ac.uk/people/person/blake-sweeney/)
+
+## Derived Datasets
+
+- [rnacentral](https://huggingface.co/datasets/multimolecule/rnacentral): RNAcentral dataset.
+- [rnacentral-secondary_structure](https://huggingface.co/datasets/multimolecule/rnacentral-secondary_structure): RNAcentral subset with secondary structure annotations.
+- [rnacentral-modifications](https://huggingface.co/datasets/multimolecule/rnacentral-modifications): RNAcentral subset with modifications annotations.
+
+## License
+
+This dataset is licensed under the [AGPL-3.0 License](https://www.gnu.org/licenses/agpl-3.0.html).
+
+```spdx
+SPDX-License-Identifier: AGPL-3.0-or-later
+```
+
+> [!TIP]
+> The original RNAcentral dataset is licensed under the CC0 1.0 Universal (CC0 1.0) Public Domain Dedication.
+>
+> This dataset is a derivative of the original RNAcentral dataset and uses a different license.
+
+## Citation
+
+```bibtex
+@article{rnacentral2021,
+  author    = {{RNAcentral Consortium}},
+  doi       = {https://doi.org/10.1093/nar/gkaa921},
+  journal   = {Nucleic Acids Research},
+  month     = jan,
+  number    = {D1},
+  pages     = {D212--D220},
+  publisher = {Oxford University Press (OUP)},
+  title     = {{RNAcentral} 2021: secondary structure integration, improved sequence search and new member databases},
+  url       = {https://academic.oup.com/nar/article/49/D1/D212/5940500},
+  volume    = 49,
+  year      = 2021
+}
+
+@article{sweeney2020exploring,
+  author   = {Sweeney, Blake A. and Tagmazian, Arina A. and Ribas, Carlos E. and Finn, Robert D. and Bateman, Alex and Petrov, Anton I.},
+  doi      = {https://doi.org/10.1002/cpbi.104},
+  eprint   = {https://currentprotocols.onlinelibrary.wiley.com/doi/pdf/10.1002/cpbi.104},
+  journal  = {Current Protocols in Bioinformatics},
+  keywords = {Galaxy, ncRNA, non-coding RNA, RNAcentral, RNA-seq},
+  number   = {1},
+  pages    = {e104},
+  title    = {Exploring Non-Coding RNAs in RNAcentral},
+  url      = {https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.104},
+  volume   = 71,
+  year     = 2020
+}
+
+@article{rnacentral2019,
+  author    = {{The RNAcentral Consortium}},
+  doi       = {https://doi.org/10.1093/nar/gky1034},
+  journal   = {Nucleic Acids Research},
+  month     = jan,
+  number    = {D1},
+  pages     = {D221--D229},
+  publisher = {Oxford University Press (OUP)},
+  title     = {{RNAcentral}: a hub of information for non-coding {RNA} sequences},
+  url       = {https://academic.oup.com/nar/article/47/D1/D221/5160993},
+  volume    = 47,
+  year      = 2019
+}
+
+@article{rnacentral2017,
+  author    = {{The RNAcentral Consortium} and Petrov, Anton I and Kay, Simon J E and Kalvari, Ioanna and Howe, Kevin L and Gray, Kristian A and Bruford, Elspeth A and Kersey, Paul J and Cochrane, Guy and Finn, Robert D and Bateman, Alex and Kozomara, Ana and Griffiths-Jones, Sam and Frankish, Adam and Zwieb, Christian W and Lau, Britney Y and Williams, Kelly P and Chan, Patricia Pand Lowe, Todd M and Cannone, Jamie J and Gutell, Robin and Machnicka, Magdalena A and Bujnicki, Janusz M and Yoshihama, Maki and Kenmochi, Naoya and Chai, Benli and Cole, James R and Szymanski, Maciej and Karlowski, Wojciech M and Wood, Valerie and Huala, Eva and Berardini, Tanya Z and Zhao, Yi and Chen, Runsheng and Zhu, Weimin and Paraskevopoulou, Maria D and Vlachos, Ioannis S and Hatzigeorgiou, Artemis G and Ma, Lina and Zhang, Zhang and Puetz, Joern and Stadler, Peter F and McDonald, Daniel and Basu, Siddhartha and Fey, Petra and Engel, Stacia R and Cherry, J Michael and Volders, Pieter-Jan and Mestdagh, Pieter and Wower, Jacek and Clark, Michael B and Quek, Xiu Cheng and Dinger, Marcel E},
+  doi       = {https://doi.org/10.1093/nar/gkw1008},
+  journal   = {Nucleic Acids Research},
+  month     = jan,
+  number    = {D1},
+  pages     = {D128--D134},
+  publisher = {Oxford University Press (OUP)},
+  title     = {{RNAcentral}: a comprehensive database of non-coding {RNA} sequences},
+  url       = {https://academic.oup.com/nar/article/45/D1/D128/2333921},
+  volume    = 45,
+  year      = 2017
+}
+
+@article{rnacentral2015,
+  author  = {{RNAcentral Consortium} and Petrov, Anton I and Kay, Simon J E and Gibson, Richard and Kulesha, Eugene and Staines, Dan and Bruford, Elspeth A and Wright, Mathew W and Burge, Sarah and Finn, Robert D and Kersey, Paul J and Cochrane, Guy and Bateman, Alex and Griffiths-Jones, Sam and Harrow, Jennifer and Chan, Patricia P and Lowe, Todd M and Zwieb, Christian W and Wower, Jacek and Williams, Kelly P and Hudson, Corey M and Gutell, Robin and Clark, Michael B and Dinger, Marcel and Quek, Xiu Cheng and Bujnicki, Janusz M and Chua, Nam-Hai and Liu, Jun and Wang, Huan and Skogerb{\o}, Geir and Zhao, Yi and Chen, Runsheng and Zhu, Weimin and Cole, James R and Chai, Benli and Huang, Hsien-Da and Huang, His-Yuan and Cherry, J Michael and Hatzigeorgiou, Artemis and Pruitt, Kim D},
+  doi     = {https://doi.org/10.1093/nar/gku991},
+  journal = {Nucleic Acids Research},
+  month   = jan,
+  number  = {Database issue},
+  pages   = {D123--D129},
+  title   = {{RNAcentral}: an international database of {ncRNA} sequences},
+  url     = {https://academic.oup.com/nar/article/43/D1/D123/2439941},
+  volume  = 43,
+  year    = 2015
+}
+
+@article{bateman2011rnacentral,
+  author    = {Bateman, Alex and Agrawal, Shipra and Birney, Ewan and Bruford, Elspeth A and Bujnicki, Janusz M and Cochrane, Guy and Cole, James R and Dinger, Marcel E and Enright, Anton J and Gardner, Paul P and Gautheret, Daniel and Griffiths-Jones, Sam and Harrow, Jen and Herrero, Javier and Holmes, Ian H and Huang, Hsien-Da and Kelly, Krystyna A and Kersey, Paul and Kozomara, Ana and Lowe, Todd M and Marz, Manja and Moxon, Simon andPruitt, Kim D and Samuelsson, Tore and Stadler, Peter F and Vilella, Albert J and Vogel, Jan-Hinnerk and Williams, Kelly P and Wright, Mathew W and Zwieb, Christian},
+  doi       = {https://doi.org/10.1261/rna.2750811},
+  journal   = {RNA},
+  month     = nov,
+  number    = 11,
+  pages     = {1941--1946},
+  publisher = {Cold Spring Harbor Laboratory},
+  title     = {{RNAcentral}: A vision for an international database of {RNA} sequences},
+  url       = {https://rnajournal.cshlp.org/content/17/11/1941.long},
+  volume    = 17,
+  year      = 2011
+}
+```

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