Q:

Could not load file or assembly 'MySql.Data

I am developing an application  in ASp.net mvc 5 and using code first approach.
when i try to enable migration then it is throwing an error. I found already MySQL.Data.dll in references. what can be the issue? 
i uploaded the source at here.
If possible then guide me. Thanks
error is mentioned below;

enable-migrations -contexttypename SMSContext
Checking if the context targets an existing database...
System.IO.FileLoadException: Could not load file or assembly 'MySql.Data, Version=6.9.3.0, Culture=neutral, PublicKeyToken=c5687fc88969c44d' or one of its dependencies. The located assembly's manifest definition does not match the assembly reference. (Exception from HRESULT: 0x80131040)
File name: 'MySql.Data, Version=6.9.3.0, Culture=neutral, PublicKeyToken=c5687fc88969c44d'
   at System.RuntimeTypeHandle.GetTypeByName(String name, Boolean throwOnError, Boolean ignoreCase, Boolean reflectionOnly, StackCrawlMarkHandle stackMark, IntPtr pPrivHostBinder, Boolean loadTypeFromPartialName, ObjectHandleOnStack type)
   at System.RuntimeTypeHandle.GetTypeByName(String name, Boolean throwOnError, Boolean ignoreCase, Boolean reflectionOnly, StackCrawlMark& stackMark, IntPtr pPrivHostBinder, Boolean loadTypeFromPartialName)
   at System.RuntimeType.GetType(String typeName, Boolean throwOnError, Boolean ignoreCase, Boolean reflectionOnly, StackCrawlMark& stackMark)
   at System.Type.GetType(String typeName)
   at System.Data.Common.DbProviderFactories.GetFactory(DataRow providerRow)
   at System.Data.Common.DbProviderFactories.GetFactory(String providerInvariantName)
   at System.Data.Entity.Infrastructure.DependencyResolution.DefaultProviderFactoryResolver.GetService(Type type, Object key, Func`3 handleFailedLookup)
   at System.Data.Entity.Infrastructure.DependencyResolution.DefaultProviderFactoryResolver.GetService(Type type, Object key)
   at System.Data.Entity.Infrastructure.DependencyResolution.CachingDependencyResolver.<>c__DisplayClass1.<GetService>b__0(Tuple`2 k)
   at System.Collections.Concurrent.ConcurrentDictionary`2.GetOrAdd(TKey key, Func`2 valueFactory)
   at System.Data.Entity.Infrastructure.DependencyResolution.CachingDependencyResolver.GetService(Type type, Object key)
   at System.Data.Entity.Infrastructure.DependencyResolution.ResolverChain.<>c__DisplayClass3.<GetService>b__0(IDbDependencyResolver r)
   at System.Linq.Enumerable.WhereSelectArrayIterator`2.MoveNext()
   at System.Linq.Enumerable.FirstOrDefault[TSource](IEnumerable`1 source, Func`2 predicate)
   at System.Data.Entity.Infrastructure.DependencyResolution.ResolverChain.GetService(Type type, Object key)
   at System.Data.Entity.Infrastructure.DependencyResolution.RootDependencyResolver.GetService(Type type, Object key)
   at System.Data.Entity.Infrastructure.DependencyResolution.ResolverChain.<>c__DisplayClass3.<GetService>b__0(IDbDependencyResolver r)
   at System.Linq.Enumerable.WhereSelectArrayIterator`2.MoveNext()
   at System.Linq.Enumerable.FirstOrDefault[TSource](IEnumerable`1 source, Func`2 predicate)
   at System.Data.Entity.Infrastructure.DependencyResolution.ResolverChain.GetService(Type type, Object key)
   at System.Data.Entity.Infrastructure.DependencyResolution.CompositeResolver`2.GetService(Type type, Object key)
   at System.Data.Entity.Infrastructure.DependencyResolution.DbDependencyResolverExtensions.GetService[T](IDbDependencyResolver resolver, Object key)
   at System.Data.Entity.Internal.LazyInternalConnection.CreateConnectionFromProviderName(String providerInvariantName)
   at System.Data.Entity.Internal.LazyInternalConnection.InitializeFromConnectionStringSetting(ConnectionStringSettings appConfigConnection)
   at System.Data.Entity.Internal.LazyInternalConnection.TryInitializeFromAppConfig(String name, AppConfig config)
   at System.Data.Entity.Internal.LazyInternalConnection.Initialize()
   at System.Data.Entity.Internal.LazyInternalConnection.get_Connection()
   at System.Data.Entity.Internal.LazyInternalContext.get_Connection()
   at System.Data.Entity.Infrastructure.DbContextInfo..ctor(Type contextType, DbProviderInfo modelProviderInfo, AppConfig config, DbConnectionInfo connectionInfo, Func`1 resolver)
   at System.Data.Entity.Migrations.DbMigrator..ctor(DbMigrationsConfiguration configuration, DbContext usersContext, DatabaseExistenceState existenceState, Boolean calledByCreateDatabase)
   at System.Data.Entity.Migrations.DbMigrator..ctor(DbMigrationsConfiguration configuration)
   at System.Data.Entity.Migrations.Design.MigrationScaffolder..ctor(DbMigrationsConfiguration migrationsConfiguration)
   at System.Data.Entity.Migrations.Design.ToolingFacade.ScaffoldRunner.Run()
   at System.AppDomain.DoCallBack(CrossAppDomainDelegate callBackDelegate)
   at System.AppDomain.DoCallBack(CrossAppDomainDelegate callBackDelegate)
   at System.Data.Entity.Migrations.Design.ToolingFacade.Run(BaseRunner runner)
   at System.Data.Entity.Migrations.Design.ToolingFacade.ScaffoldInitialCreate(String language, String rootNamespace)
   at System.Data.Entity.Migrations.EnableMigrationsCommand.<>c__DisplayClass2.<.ctor>b__0()
   at System.Data.Entity.Migrations.MigrationsDomainCommand.Execute(Action command)

WRN: Assembly binding logging is turned OFF.
To enable assembly bind failure logging, set the registry value [HKLM\Software\Microsoft\Fusion!EnableLog] (DWORD) to 1.
Note: There is some performance penalty associated with assembly bind failure logging.
To turn this feature off, remove the registry value [HKLM\Software\Microsoft\Fusion!EnableLog].

Could not load file or assembly 'MySql.Data, Version=6.9.3.0, Culture=neutral, PublicKeyToken=c5687fc88969c44d' or one of its dependencies. The located assembly's manifest definition does not match the assembly reference. (Exception from HRESULT: 0x80131040)

A:

in your web.config:
<DbProviderFactories>
  <remove invariant="MySql.Data.MySqlClient" />
  <add name="MySQL Data Provider" invariant="MySql.Data.MySqlClient" description=".Net Framework Data Provider for MySQL" type="MySql.Data.MySqlClient.MySqlClientFactory, MySql.Data, Version=6.9.3.0, Culture=neutral, PublicKeyToken=c5687fc88969c44d" />
</DbProviderFactories>

Version set to 6.9.3.0 but in your bin folder files MySql.Data.dll and MySql.Data.Entity.EF6.dll has version 6.8.3.0
Modify your web config to use proper version or update your dlls from packages folder.
The root of your problem is when you, using nuget, installed MySql.Data.Entities it replaced your newer version of MySql.Data with older, but web config stay unchanged. 

