Update sci_lay.py
Browse files- sci_lay.py +17 -24
sci_lay.py
CHANGED
@@ -18,7 +18,7 @@ SCILAY comprises 43,790 instances, each representing a scientific article in the
|
|
18 |
Each instance in the dataset includes the following components:
|
19 |
- plain_text: Containing a plain language summary of the scientific article. This section is written in a simple and accessible language, and is intended to be understandable by a wide audience.
|
20 |
- technical_text: This section contains the abstract of the scientific article. It provides a detailed and technical description of the research conducted in the article.
|
21 |
-
- full_text: This section contains the complete article of the scientific research
|
22 |
In addition to the textual content, each instance is associated with the following metadata:
|
23 |
- Keywords: Keywords that capture the main topics and themes addressed in the article.
|
24 |
- Journal: The journal in which the article is published, providing context about the source of the research.
|
@@ -41,21 +41,20 @@ _TOPICS = "topics"
|
|
41 |
_KEYWORDS = "keywords"
|
42 |
|
43 |
_JOURNALS = {
|
44 |
-
"NC": "
|
45 |
-
"A": "
|
46 |
-
"PLGEN": "
|
47 |
-
"PLPAT": "
|
48 |
-
"PLCB": "
|
49 |
-
"PLNTD": "
|
50 |
-
"B": "
|
51 |
-
"I": "
|
52 |
-
"
|
53 |
-
"
|
54 |
-
"
|
55 |
-
"
|
56 |
-
"
|
57 |
-
"
|
58 |
-
"OTHER": "Others"
|
59 |
}
|
60 |
|
61 |
# Available versions:
|
@@ -70,7 +69,7 @@ class SciLayConfig(datasets.BuilderConfig):
|
|
70 |
"""BuilderConfig for SciLay.
|
71 |
Args:
|
72 |
journals (str or list, default 'all'): List of journal names. Either 'all' or a combination
|
73 |
-
of {'NC', 'A', '
|
74 |
**kwargs: keyword arguments forwarded to super.
|
75 |
"""
|
76 |
if isinstance(journals, str):
|
@@ -149,8 +148,7 @@ class SciLay(datasets.GeneratorBasedBuilder):
|
|
149 |
with open(path, "rb") as fin:
|
150 |
for row in fin:
|
151 |
json_obj = json.loads(row)
|
152 |
-
|
153 |
-
yield unique_key, {
|
154 |
_DOI: json_obj[_DOI],
|
155 |
_PMCID: json_obj[_PMCID],
|
156 |
_SUMMARY: json_obj[_SUMMARY],
|
@@ -160,8 +158,3 @@ class SciLay(datasets.GeneratorBasedBuilder):
|
|
160 |
_TOPICS: json_obj[_TOPICS],
|
161 |
_KEYWORDS: json_obj[_KEYWORDS]
|
162 |
}
|
163 |
-
|
164 |
-
|
165 |
-
def generate_random_string(length=10):
|
166 |
-
letters = string.ascii_lowercase + string.ascii_uppercase
|
167 |
-
return ''.join(random.choice(letters) for _ in range(length))
|
|
|
18 |
Each instance in the dataset includes the following components:
|
19 |
- plain_text: Containing a plain language summary of the scientific article. This section is written in a simple and accessible language, and is intended to be understandable by a wide audience.
|
20 |
- technical_text: This section contains the abstract of the scientific article. It provides a detailed and technical description of the research conducted in the article.
|
21 |
+
- full_text: This section contains the complete article of the scientific research.
|
22 |
In addition to the textual content, each instance is associated with the following metadata:
|
23 |
- Keywords: Keywords that capture the main topics and themes addressed in the article.
|
24 |
- Journal: The journal in which the article is published, providing context about the source of the research.
|
|
|
41 |
_KEYWORDS = "keywords"
|
42 |
|
43 |
_JOURNALS = {
|
44 |
+
"NC": "nature communications",
|
45 |
+
"A": "animals : an open access journal from mdpi",
|
46 |
+
"PLGEN": "plos genetics",
|
47 |
+
"PLPAT": "plos pathogens",
|
48 |
+
"PLCB": "plos computational biology",
|
49 |
+
"PLNTD": "plos neglected tropical diseases",
|
50 |
+
"B": "biology",
|
51 |
+
"I": "insects",
|
52 |
+
"PLB": "plos biology",
|
53 |
+
"CB": "communications biology",
|
54 |
+
"SD": "scientific data",
|
55 |
+
"MBIO": "mbio",
|
56 |
+
"C": "cancers",
|
57 |
+
"OTHER": "others"
|
|
|
58 |
}
|
59 |
|
60 |
# Available versions:
|
|
|
69 |
"""BuilderConfig for SciLay.
|
70 |
Args:
|
71 |
journals (str or list, default 'all'): List of journal names. Either 'all' or a combination
|
72 |
+
of {'NC', 'A', 'PLGEN', 'PLPAT', 'PLCB', 'PLNTD', 'B', 'I', 'PLB', 'CB', 'SD', 'MBIO', 'C', 'OTHER'}.
|
73 |
**kwargs: keyword arguments forwarded to super.
|
74 |
"""
|
75 |
if isinstance(journals, str):
|
|
|
148 |
with open(path, "rb") as fin:
|
149 |
for row in fin:
|
150 |
json_obj = json.loads(row)
|
151 |
+
yield json_obj[_DOI], {
|
|
|
152 |
_DOI: json_obj[_DOI],
|
153 |
_PMCID: json_obj[_PMCID],
|
154 |
_SUMMARY: json_obj[_SUMMARY],
|
|
|
158 |
_TOPICS: json_obj[_TOPICS],
|
159 |
_KEYWORDS: json_obj[_KEYWORDS]
|
160 |
}
|
|
|
|
|
|
|
|
|
|