1. A method of creating a pattern to be followed by a laser over a new coordinate center comprising the steps of: measuring an original wavefront centered on a center of a pupil; quantifying the original wavefront in terms of aberration polynomials, each aberration polynomial being weighted by an aberration coefficient; determining a shift from the center of the pupil to the new coordinate center, the new coordinate center being located at an approximation of or on the visual axis of the eye at an intersection of a cornea of the eye; transforming the aberration coefficients based on the shift, wherein the transformed aberration coefficients define a reconstructed wavefront; and creating the pattern for the laser from the reconstructed wavefront, wherein the pattern is centered over the new coordinate center.