1. A system for generating an image registration map, said system comprising: one or more processors programmed to: receive a first image and a second image; identify corresponding interest points in the first image and the second image; identify corresponding structures in the first image and the second image; select corresponding boundary points of the structures in the first image and the second image; and, generate a registration map from the corresponding interest points and at least one pair of the corresponding boundary points using point based registration.