1. A microscope system for the analysis and evaluation of multiple colorings in a microscopic specimen, comprising: a scanning microscope that defines an illuminating light beam and a detected light beam; an SP module that is arranged in the detected light beam in front of at least one detector; and a computer system with a memory, wherein a database is provided in which discrete dye spectra are stored; the computer system encompasses a software program that performs a transformation of the data of the ascertained spectra and a transformation of the dye spectra stored in the database; and the software program allocates the transformed dye spectra to the measured spectra, in which context a comparison can be performed.