List of sequenced plant genomes

This list of sequenced plant genomes contains plant species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle only sequences. For all kingdoms, see the list of sequenced genomes.

Algae 
Unicellular photosynthetic eukaryotes. For a more complete list, see List of sequenced algae genomes.

Bryophytes

Higher plants (vascular plants)

Ferns

Gymnosperms

Angiosperms

Amborellales

Eudicots

Proteales

Ranunculales

Trochodendrales

Caryophyllales

Rosids 

{| class="wikitable sortable" style="border:1px solid #aaa;"
|-
! Organism strain !! Family !! Relevance !! Genome size !! Number of genes predicted 
!No of chromosomes!! Organization !! Year of completion !! Assembly status
|-
|Sclerocarya birrea
(Marula)
|Anacardiaceae
|Used for food
|
|18,397
|
|
|2018
|
|- 
| Betula pendula (silver birch) || Betulaceae || Boreal forest tree, model for forest biotechnology || 435 Mbp|| 28,399
|14
| University of Helsinki || 2017 || 454/Illumina/PacBio. Assembly size 435 Mbp. Contig N50: 48,209 bp, scaffold N50: 239,796 bp. 89% of the assembly mapped to 14 pseudomolecules. Additionally 150 birch individuals sequenced.
|-
| Betula nana (dwarf birch) || Betulaceae || Arctic shrub || 450 Mbp || 
| ||QMUL/SBCS || 2013 ||
|-
| Aethionema arabicum || Brassicaceae || Comparative analysis of crucifer genomes || || 
| ||  || 2013 ||
|-
| Arabidopsis lyrata ssp. lyrata strain MN47 ||Brassicaceae || Model plant ||206.7 Mbp
|32,670
|8||  || 2011 ||8.3X sequence coverage, analyzed on ABI 3730XL capillary sequencers
|-
| Arabidopsis thaliana Ecotype:Columbia || Brassicaceae || Model plant || 135 Mbp ||27,655
|5
|AGI
| 2000 ||
|-
|Barbarea vulgaris
G-type
|Brassicaceae
|Model plant for specialised metabolites and plant defenses
|167.7 Mbp
|25,350
|8
|
|2017
|66.5 X coverage with Illumina GA II technology
|-
| Brassica rapa ssp. pekinensis (Chinese cabbage) accession Chiifu-401-42 ||Brassicaceae || Assorted crops and model organism ||485 Mbp
|41,174 (has undergone genome triplication)
|10
|The Brassica rapa Genome Sequencing Project Consortium
| 2011 ||72X coverage of paired short read sequences generated by Illumina GA II technology
|-
|Brassica napus (Oilseed rape or rapeseed) European winter oilseed cultivar ‘Darmor-bzh'
|Brassicaceae
|Crops
|1130 Mbp
|101,040
|19
|Institutional Collaboration
|2014
|454 GS-FLX+ Titanium (Roche, Basel, Switzerland) and Sanger sequencing. Correction and gap filling used 79 Gb of Illumina (San Diego, CA) HiSeq sequence.
|-
| Capsella rubella || Brassicaceae || Close relative of Arabidopsis thaliana || 130 Mbp || 26,521
| || JGI || 2013? 2013||
|-
|Cardamine hirsuta (hairy bittercress) strain ‘Oxford’ 
|Brassicaceae
|A model system for studies in evolution of plant development
|198 Mbp
|29,458
|8
|Max Planck Institute for Plant Breeding Research, Köln, Germany
|2016
|Shotgun sequencing strategy, combining paired end reads (197× assembled sequence coverage) and mate pair reads (66× assembled) from Illumina HiSeq (a total of 52 Gbp raw reads).
|-
| Eutrema salsugineum || Brassicaceae || A relative of arabidopsis with high salt tolerance || 240 Mbp || 26,351
| || JGI || 2013 ||
|-
| Eutrema parvulum || Brassicaceae || Comparative analysis of crucifer genomes || || 
| ||  || 2013 ||
|-
| Leavenworthia alabamica || Brassicaceae || Comparative analysis of crucifer genomes || || 
| ||  || 2013 ||
|-
| Sisymbrium irio || Brassicaceae || Comparative analysis of crucifer genomes || || 
| ||  || 2013 ||
|-
| Thellungiella parvula || Brassicaceae || A relative of arabidopsis with high salt tolerance || || 
| ||  || 2011 ||
|-
| Cannabis sativa (hemp) || Cannabaceae || Hemp and marijuana production || ca 820 Mbp|| 30,074 based on transcriptome assembly and clustering
| ||  || 2011 ||Illumina/454

scaffold N50 16.2 Kbp
|-
| Carica papaya (papaya)|| Caricaceae || Fruit crop || 372 Mbp|| 28,629
| ||  || 2008 ||contig N50 11kbp

scaffold N50

1Mbp

total coverage ~3x (Sanger)

92.1% unigenes mapped

235Mbp anchored (of this 161Mbp also oriented)
|-
|Casuarina equisetifolia
(Australian Pine)
|Casuarinaceae
|bonsai subject 
|300 Mbp
|29,827
|
|
|2018
|
|-
|Kalanchoë fedtschenkoi Raym.-Hamet & H. PerrierKalanchoe ||Crassulaceae ||Molecular genetic model for obligate CAM species in the eudicots
|256 Mbp
|30,964
|34
|  || 2017||~70× paired-end reads and ~37× mate-pair reads generated using an Illumina MiSeq platform.
|-
|Rhodiola crenulata (Tibetan medicinal herb)
|Crassulaceae
|Uses for medicine and food
|344.5 Mb
|35,517
|
|
|2017
|
|-
| Citrullus lanatus (watermelon) || Cucurbitaceae || Vegetable crop || ca 425 Mbp|| 23,440
| || BGI || 2012 ||Illumina

coverage 108.6x

contig N50 26.38 kbp

Scaffold N50 2.38 Mbp

genome covered 83.2%

~97% ESTs mapped
|-
| Cucumis melo (Muskmelon) DHL92 || Cucurbitaceae || Vegetable crop || 450 Mbp|| 27,427
| ||  || 2012 ||454

13.5x coverage

contig N50: 18.1kbp

scaffold N50: 4.677 Mbp

WGS
|-
| Cucumis sativus (cucumber) 'Chinese long' inbred line 9930 || Cucurbitaceae || Vegetable crop || 350 Mbp (Kmer depth) 367 Mbp (flow cytometry)|| 26,682 
| ||  || 2009 ||contig N50 19.8kbp

scaffold N50 1,140kbp

total coverage ~72.2 (Sanger + Ilumina)

96.8% unigenes mapped

72.8% of the genome anchored
|-
|Siraitia grosvenorii
(Monk fruit)
|Cucurbitaceae
|Chinese medicine/sweetener
|456.5 Mbp
|30,565
|
|Anhui Agricultural University
|2018
|
|-
| Hevea brasiliensis (rubber tree) || Euphorbiaceae || the most economically important member of the genus Hevea || || 
| ||  || 2013 ||
|-
| Jatropha curcas Palawan || Euphorbiaceae || bio-diesel crop || || 
| ||  || 2011 ||
|-
| Manihot esculenta (Cassava) || Euphorbiaceae || Humanitarian importance || ~760 Mb || 30,666
| || JGI || 2012 ||
|-
| Ricinus communis (Castor bean) || Euphorbiaceae || Oilseed crop || 320 Mbp || 31,237
| || JCVI || 2010 || Sanger coverage~4.6x contig N50 21.1 kbp scaffold N50 496.5kbp
|-
|Ammopiptanthus nanus
|Fabaceae
|Only genus of evergreen broadleaf shrub
|889 Mb
|37,188
|
|
|2018
|
|-
| Cajanus cajan (Pigeon pea) var. Asha || Fabaceae || Model legume || || 
| ||  || 2012 ||
|-
| Arachis duranensis (A genome diploid wild peanut) accession V14167 || Fabaceae || Wild ancestor of peanut, an oilseed and grain legume crop || || 
| ||  || 2016 ||Illumina 154x coverage, contig N50 22 kbp, scaffold N50 948 kbp
|-
|Arachis ipaensis (B genome diploid wild peanut) accession K30076
|Fabaceae
|Wild ancestor of peanut, an oilseed and grain legume crop
|
|
|
|
|2016
|Illumina 163x coverage, contig N50 23 kbp, scaffold N50 5,343 kbp
|-
| Cicer arietinum (chickpea) || Fabaceae || filling || || 
| ||  || 2013 ||
|-
| Cicer arietinum L. (chickpea) || Fabaceae || || || 
| ||  || 2013 ||
|-
|Faidherbia albida
(Apple-Ring Acacia)
|Fabaceae
|Importante in the Sahel for raising bees
|
|28,979
|
|
|2018
|
|-
| Glycine max (soybean) var. Williams 82 || Fabaceae || Protein and oil crop || 1115 Mbp|| 46,430
| ||  || 2010 ||Contig N50:189.4kbp

Scaffold N50:47.8Mbp

Sanger coverage ~8x

WGS

955.1 Mbp assembled
|-
|Lablab purpureus
(Hyacinth Bean)
|Fabaceae
|Crop for human consumption
|
|20,946
|
|
|2018
|
|-
| Lotus japonicus (Bird's-foot Trefoil) || Fabaceae || Model legume || || 
| ||  || 2008 ||
|-
| Medicago truncatula (Barrel Medic) || Fabaceae || Model legume || || 
| ||  || 2011 ||
|-
| Phaseolus vulgaris (common bean) || Fabaceae || Model bean || 520 Mbp || 31,638
| || JGI || 2013? ||
|-
|Vigna subterranea
(Bambara Groundnut)
|Fabaceae
|similar to peanuts
|
|31,707
|
|
|2018
|
|-
|Castanea mollissima (Chinese chestnut)
|Fagaceae
|cultivated nut
|785.53 Mb
|36,479 
|
|Beijing University of Agriculture
|2019
|Illumina: ∼42.7×
PacBio: ∼87×

contig N50: 944,000bp
|-
|Carya illinoinensis
Pecan
|Junglandaceae
|snacks in various recipes
|651.31 Mb
|
|
|
|2019
|
|-
| Linum usitatissimum (flax) || Linaceae || Crop || ~350 Mbp || 43,384
| ||BGI et al. || 2012 ||
|-
|Bombax ceiba

(red silk cotton tree)
|Malvaceae
|capsules with white fibre like cotton
|895 Mb
|
|
|
|2018
|
|-
| Durio zibethinus (Durian) || Malvaceae || Tropical fruit tree || ~738 Mbp || 
| ||  || 2017 ||
|-
| Gossypium raimondii || Malvaceae || One of the putative progenitor species of tetraploid cotton || || 
| ||  || 2013? ||
|-
| Theobroma cacao (cocoa tree) || Malvaceae || Flavouring crop || || 
| ||  || 2010 ||
|-
| Theobroma cacao (cocoa tree) cv. Matina 1-6 || Malvaceae || Most widely cultivated cacao type || || 
| ||  || 2013 ||
|-
|Theobroma cacao (200 accessions)
|Malvaceae
|domestication history of cacao
|
|
|
|
|2018
|
|-
| Azadirachta indica (neem) || Meliaceae || Source of number of Terpenoids, including biopesticide azadirachtin, Used in Traditional Medicine || 364 Mbp || ~20000 
| ||GANIT Labs || 2012 and 2011 || Illumina GAIIx, scaffold N50 of 452028bp, Transcriptome data from Shoot, Root, Leaf, Flower and Seed
|-
|Moringa oleifera
(Horseradish Tree)
|Moringaceae
|traditional herbal medicine
|
|18,451
|
|
|2018
|
|-
| Eucalyptus grandis (Rose gum) || Myrtaceae || Fibre and timber crop || || 
| ||  || 2011 ||
|-
|C. cathayensis
(Chinese hickory)
|Rosaceae
|fruit crop
|706.43 Mb
|
|
|
|2019
|
|-
| Fragaria vesca (wild strawberry) || Rosaceae || Fruit crop || 240 Mbp|| 34,809
| ||  || 2011 ||scaffold N50: 1.3 Mbp

454/Illumina/solid

39x coverage

WGS

|-
| Malus domestica (apple) "Golden Delicious" || Rosaceae || Fruit crop || ~742.3 Mbp|| 57,386
| ||  || 2010 ||contig N50 13.4 (kbp??)

scaffold N50 1,542.7 (kbp??)

total coverage ~16.9x (Sanger + 454)

71.2% anchored
|-
| Prunus amygdalus (almond) || Rosaceae || Fruit crop || || 
| ||  || 2013? ||
|-
| Prunus avium (sweet cherry) cv. Stella || Rosaceae || Fruit crop || || 
| ||  || 2013? ||
|-
| Prunus mume (Chinese plum or Japanese apricot) || Rosaceae || Fruit crop || || 
| ||  || 2012 ||
|-
| Prunus persica (peach) || Rosaceae || Fruit crop || 265 Mbp|| 27,852
| ||  || 2013 ||Sanger coverage:8.47x

WGS

ca 99% ESTs mapped

215.9 Mbp in pseudomolecules
|-
| Pyrus bretschneideri (ya pear or Chinese white pear) cv. Dangshansuli || Rosaceae || Fruit crop || || 
| ||  || 2012 ||
|-
| Pyrus communis (European pear) cv. Doyenne du Comice || Rosaceae || Fruit crop || || 
| ||  || 2013? ||
|-
|Rubus occidentalis(Black raspberry)
|Rosaceae
|Fruit crop
|43 Mbp
|
|
|
|2018
|
|-
| Citrus clementina (Clementine) || Rutaceae || Fruit crop || || 
| ||  || 2013? ||
|-
| Citrus sinensis (Sweet orange) || Rutaceae || Fruit crop || || 
| ||  || 2013?, 2013||
|-
| Populus trichocarpa (poplar) || Salicaceae || Carbon sequestration, model tree, timber || 510 Mbp (cytogenetic) 485 Mbp (coverage)|| 73,013 [Phytozome]
| ||  || 2006 ||Scaffold N50: 19.5 Mbp

Contig N50:552.8 Kbp [phytozome]

WGS

>=95 % cDNA found
|-
|Populus pruinosa(desert tree)
|Salicaceae
|farming and rancing
|479.3 Mbp
|35,131
|
|
|2017
|
|-
|Acer yangbiense|Sapindaceae
|Fruit crop
|110 Gb
|28,320
|
|
|2019
|
|-
|Dimocarpus longan (Longan)
|Sapindaceae
|Fruit crop
|471.88 Mb
|
|
|
|2017
|
|-
|Xanthoceras sorbifolium Bunge (Yellowhorn)
|Sapindaceae
|Fruit Crop
|504.2 Mb
|24,672
|
|
|2019
|
|-
| Vitis vinifera (grape) genotype PN40024 || Vitaceae || fruit crop || || 
| ||  || 2007 ||
|}

 Asterids 

 Monocots 

 Grasses 

 Other non-grasses 

 Press releases announcing sequencing 
Not meeting criteria of the first paragraph of this article in being nearly full sequences with high quality, published, assembled and publicly available. This list includes species where sequences are announced in press releases or websites, but not in a data-rich publication in a refereed peer-review journal with DOI.Corchorus olitorius (Jute mallow), fibre plant 2017Corchorus capsularis 2017
 Fraxinus excelsior'', European ash (2013 draft)

See also 
 List of sequenced eukaryotic genomes
 List of sequenced animal genomes
 List of sequenced archaeal genomes
 List of sequenced bacterial genomes
 List of sequenced fungi genomes
 List of sequenced plastomes
 List of sequenced protist genomes

External links
 http://plabipd.de/timeline_view.ep
 http://genomevolution.org/wiki/index.php/Sequenced_plant_genomes
 https://phytozome.jgi.doe.gov/pz/portal.html
 https://bioinformatics.psb.ugent.be/plaza/

References 

Category:Biology-related lists
Plant