article: Certain genes exhibit notable diversity in their expression patterns both within and between species. One such gene is the vasopressin receptor 1a gene (Avpr1a), which exhibits striking differences in neural expression patterns that are responsible for mediating differences in vasopressin-mediated social behaviors. The genomic mechanisms that contribute to these remarkable differences in expression are not well understood. Previous work has suggested that both the proximal 5′ flanking region and a polymorphic microsatellite element within that region of the vole Avpr1a gene are associated with variation in V1a receptor (V1aR) distribution and behavior, but neither has been causally linked. Using homologous recombination in mice, we reveal the modest contribution of proximal 5′ flanking sequences to species differences in V1aR distribution, and confirm that variation in V1aR distribution impacts stress-coping in the forced swim test. We also demonstrate that the vole Avpr1a microsatellite structure contributes to Avpr1a expression in the amygdala, thalamus, and hippocampus, mirroring a subset of the inter- and intra-species differences observed in central V1aR patterns in voles. This is the first direct evidence that polymorphic microsatellite elements near behaviorally relevant genes can contribute to diversity in brain gene expression profiles, providing a mechanism for generating behavioral diversity both at the individual and species level. However, our results suggest that many features of species-specific expression patterns are mediated by elements outside of the immediate 5′ flanking region of the gene.
  The genomic mechanisms that give rise to phenotypic diversity across species or among individuals within a species are not well understood. Behavior is a trait that is particularly well suited for exploring genetic mechanisms underlying phenotypic plasticity, as it is an evolutionarily labile trait. Social behaviors, in particular, can be markedly variable among closely related species, and often display significant individual variability within a species [1]–[6]. Genomic mechanisms that give rise to diversity in behavior fall into two categories; those that alter protein structure and function (e. g. coding region mutations) and those that alter the expression of genes [7], [8]. In Caenorhabditis elegans, for example, variation in a single nucleotide of npr-1, which alters the neuropeptide receptor protein structure, has been shown to be responsible for strain differences in social feeding behavior [9]. However, it is likely that a significant portion of phenotypic diversity is derived from mutations that alter gene expression [10]–[13]. Sequences in the 5′ flanking region of genes regulate tissue-specific expression in many cases, and are thus likely candidates for contributing to species-specific expression patterns. In addition, unstable, polymorphic repetitive elements surrounding genes have been proposed as a mechanism to enhance evolvability of traits by increasing diversity in gene expression [14], [15]. The vasopressin 1a receptor gene (Avpr1a) provides an excellent opportunity to explore both of these potential mechanisms of gene expression divergence [16], [17]. Arginine vasopressin (AVP) is an evolutionarily conserved neuropeptide that modulates a wide range of behaviors including stress coping, territorial aggression, mate-guarding, pair bonding and paternal care [18]–[21]. The vasopressin 1a receptor (V1aR) is a G-protein coupled receptor that mediates many of the behavioral effects of AVP [22]. While the structure and brain distribution of AVP are highly conserved among mammals, the behavioral effects of this peptide, and the neural distribution of V1aR vary markedly across species [23]–[25]. Among voles, for example, AVP facilitates affiliative behavior and selective aggression related to pair bonding in monogamous prairie voles (Microtus ochrogaster), but not in the closely related, non-monogamous montane voles (M. montanus) [24], [26]. Accompanying these species differences in behavioral response to AVP are remarkable species differences in V1aR distributions in the brain. For example, monogamous prairie voles have higher densities of V1aR in the ventral pallidum, central amygdala, and dentate gyrus than nonmonogamous montane or meadow voles (M. pennsylvanicus) [1], [27], [28]. These differences in V1aR distribution are due to species differences in the expression of the Avpr1a gene [26]. Furthermore, pharmacologically blocking ventral pallidal V1aR prevents mating-induced partner preference formation in prairie voles [29]. These observations suggest that variation in the neural expression patterns of Avpr1a may underlie species differences in AVP-dependent behaviors. There is substantial direct evidence supporting the hypothesis that diversity in expression of Avpr1a within the brain contributes to both intra-and inter-specific differences in behavior. For example, increasing V1aR density in the lateral septum using viral vector mediated gene transfer enhances social recognition memory in rats while increasing V1aR density in the ventral pallidum of prairie voles facilitates affiliation and pair-bond formation [30], [31]. In addition, increasing V1aR density in the anterior hypothalamus increases selective aggression in prairie voles [32]. Relatively subtle variation in expression can profoundly affect behavior since viral vector mediated RNA interference in the ventral pallidum, which results in a 30% reduction in V1aR binding, significantly reduces pair bonding behavior in prairie voles [33]. Remarkably, increasing V1aR in the ventral pallidum of meadow voles using a viral vector to mimic the distribution of V1aR in the prairie vole brain confers the ability to form a partner preference in this promiscuous species [34]. Likewise, transgenic mice carrying the prairie vole Avpr1a locus display a pattern of V1aR binding similar to that of prairie voles, and this difference in receptor patterns leads to increased affiliative behavior in response to AVP [24]. These experiments demonstrate conclusively that diversity in Avpr1a expression within the brain directly contributes to both inter and intra-species variability in AVP-mediated behaviors. Here we explore the contribution of both the 5′ flanking region and variation in hypermutable microsatellite sequences within this region in the generation of this variability in gene expression. The 2. 2 kb of sequence upstream of the Avpr1a transcription start site have been hypothesized to contain regulatory sequences that contribute to the prairie vole-like patterns of V1aR [24]. Transgenic mice carrying a randomly inserted prairie vole Avpr1a transgene, comprised of 2. 2 kb of 5′ flanking sequence, exons, introns and some downstream sequences from the prairie vole, displayed a receptor pattern more similar to that of a prairie vole than a mouse [24]. However, this prairie vole-like pattern was found in only one of four independently derived transgenic mouse lines carrying identical transgenes, suggesting that the integration site within the genome had a strong impact on expression pattern and raising a question as to the extent to which this region is actually responsible for species-specific expression patterns. Within this 5′ flanking region is a series of variable nucleotide tandem repeats (VNTRs) interspersed with non-repetitive DNA, known as the Avpr1a microsatellite. This microsatellite lies ∼760 bp upstream of the Avpr1a transcription start site and displays polymorphisms in repeat numbers and sequence content across and within vole species, and thus represents a “hot spot” for mutations (Figure 1) [17], [35]. Both species and individual differences in the Avpr1a microsatellite are sufficient to drive differences in gene expression in a cell-type specific manner in vitro, suggesting that this genetic region may represent a source of both inter- and intraspecies receptor expression variation [17], [35]. This hypothesis is further supported by associations between microsatellite length, receptor patterns, and social behavior in prairie voles [17], [36]. Specifically, in a laboratory setting, male prairie voles selectively bred to have long Avpr1a microsatellites were more likely to form partner preferences than males with short microsatellites [17]. Furthermore, long and short Avpr1a microsatellite prairie voles have different patterns of V1aR distribution in the brain [35]–[37]. However, this selection experiment cannot distinguish between the contribution of the microsatellite and other linked functional genetic variants that affect expression. Remarkably, similar polymorphisms in AVPR1A microsatellites have been associated with gene expression, brain activation, and social behavior in humans and chimpanzees [38]–[41]. Thus the vole Avpr1a is an ideal model locus for exploring the genomic mechanisms contributing to diversity in brain gene expression and behavior that has relevance to human behavior. More specifically, Avpr1a provides an opportunity to explore the relative contribution of species-specific regulatory elements in the 5′ flanking region and of polymorphic repetitive elements in that region in generating species-specific patterns and individual variation in brain gene expression. We hypothesized that replacing 3. 4 kb of the 5′ flanking region of the mouse Avpr1a gene with the prairie vole homologue would result in a prairie vole-like pattern of V1aR binding. We further hypothesized that variation in the microsatellite element in this region would confer variation in receptor distribution. To test these hypotheses, we used homologous recombination to create three lines of knock-in mice in which 3. 4 kb of the mouse 5′ flanking region was replaced with the corresponding prairie vole sequence. Each line differed only with regard to the microsatellite element – either from meadow vole or the prairie vole long or prairie vole short variants that had previously been associated with individual variation in V1aR distribution. Using receptor autoradiography, we assessed the contribution of the 5′ flanking region for determining species-specific V1aR expression patterns and microsatellite variability in generating variation in V1aR expression patterns in vivo in these three lines of mice. Our results demonstrate that both inter- and intra-species variability in the microsatellite confers differences in receptor binding in the thalamus, amygdala, and dentate gyrus, mirroring naturally-occurring differences observed both between and within vole species. However, the 5′ flanking region is not sufficient to confer species-typical binding patterns, but is sufficient to quantitatively change expression levels in a direction consistent with species differences in binding. Based on these results, we determined whether the observed differences in expression led to behavioral differences, and found that alterations in receptor binding are associated with differences in coping strategy in the forced swim test but not with differences in learning and memory in the novel object recognition task.
  We used recombinant transgenic technology to replace the 5′ flanking region of the mouse Avpr1a gene with corresponding sequence from the prairie vole. We chose to replace 3. 4 kb because this was larger than the 2. 2 kb previously used to generate a traditional transgenic mouse through pronuclear injection [24] and contained a high density of low sequence homology (53. 6% identity between mouse and prairie vole) while still being small enough for efficient homologous recombination (Figure 1a). We hypothesized that this sequence divergence would contain the elements that confer species-specific expression patterns. In order to also investigate the hypothesis that microsatellite variation within this region may contribute to species and individual differences in expression patterns, we generated 3 lines that differed only in the content of one of three Avpr1a microsatellites – either the meadow version, or a long or short version from the prairie vole (Figure 1b) - within the same prairie vole 5′ flanking region. The meadow microsatellite cassette was 175 bp long, and the short and long prairie alleles were 608 and 623 bp long, respectively. The targeting strategy is illustrated in Figure 2. For the meadow line, we screened 288 ES cell clones and identified 1 recombinant. For the prairie short line, 192 clones yielded 2 correct recombinants, and for the prairie long line, 288 clones yielded 2 correct recombinants. This corresponds with an overall recombination efficiency of 0. 6% (5 of 768). The floxed PGK-NeoR cassette was successfully removed via breeding to a ubiquitously expressing EIIa-Cre recombinase line as confirmed by PCR and Southern Blot (Figure 2). Because the Acc651 site used to screen for recombinant stem cells was located within the floxed region, excision of the NeoR also resulted in the recombinant allele yielding a ∼9. 5 kb band when detected with the external probe. The three resulting recombinant alleles, prairie vole long (pvKI-long), prairie vole short (pvKI-short), or meadow vole (mvKI) were identical in sequence except for the composition of the microsatellite element. All three lines were backcrossed to a C57Bl/6J background for at least 5 generations prior to neuroanatomical and behavioral experiments. Because we performed recombination in hybrid B6/129 ES cells, there was a possibility that recombination could occur at either the C57Bl6/J or the 129SvEv locus. In order to determine the integration site for our three lines, we genotyped rs13480799, which is located outside of the 5′ homology arm upstream of the Avpr1a gene. This SNP is a G in most lines examined, including C57-related lines, but is a C in 129-related lines [42]. Sequencing revealed that the targeting construct recombined in the C57Bl6/J allele in the mvKI line, and into the 129SvEv alleles in both pvKI lines. While this represents a potential confound that should be taken into account when considering our results, C57Bl6/J and 129SvEv strains differ very little at this locus. When comparing C57-related (C57Bl6/J and C57L/J) and 129-related (129S1/SvImJ and 129X1/SvJ) strains within 100 kb surrounding the Avpr1a locus (Chr10: 121850000–121950000; NCBI37/mm9), only 5 known SNP differences (rs29315655, rs29348001, rs13480799, rs29342115, rs633704) and 1 unresolved potential difference (rs29379744) have been described in the JAX Mouse Genome Informatics SNP database [42], [43]. 28 SNPs have been described across all strains for this region. Thus while it is possible that our line differences could be attributable to the strain origin of the locus of recombination, it is unlikely because these mouse strains are so similar in this region. Previous work had suggested that some of the elements integral to species-specific neural V1aR patterns existed within the 2. 2 kb upstream of the transcription start site of the Avpr1a gene [24]. However, independently derived lines of transgenic mice carrying this region displayed different expression patterns due to differences in chromosomal integration of the transgene. Furthermore, those transgenes also contained coding regions, introns and 3′ flanking sequences. In order to more precisely explore the role of the 5′flanking region in guiding species-specific V1aR patterns, we compared V1aR binding (as a proxy for Avpr1a expression) in wildtype (WT) and pvKI-long littermates at post-natal day (PND) 60–70. Because the endogenous mouse 5′ flanking region was replaced with prairie vole sequence, this technique was not subject to random integration effects, as occurs in traditional pronuclear injection transgenics. We used V1aR autoradiography as a proxy for Avpr1a gene expression since this technique is much more quantitative and sensitive than in situ hybridization, provides greater anatomical resolution than qPCR, and accurately reflects Avpr1a mRNA patterns (Young 1997). Furthermore, since the replaced region lies upstream of the transcription start site, variation in that sequence should not affect post-transcriptional processing. The greater signal to noise ratio of this technique allows us to detect relatively subtle differences in V1aR protein binding. Replacement of the 5′ flanking region of the murine Avpr1a locus with the same region from prairie voles yielded qualitative patterns of V1aR with elements of both mouse and prairie vole expression (Figure 3). To initially explore the effects of our manipulation on V1aR levels, we performed an overall ANOVA with three factors: genotype (WT, mvKI, pvKI-short, and pvKI-long), brain region, and sex. We identified main effects of genotype (F (3,137) = 35. 7, p<0. 001), brain region (F (4,137) = 1035. 1, p<0. 001), and sex (F (1,137) = 10748. 9, p<0. 001). In addition, there were genotype×brain region (F (12,137) = 8. 902, p<0. 001) and genotype×sex interactions (F (3,137) = 3. 451, p = 0. 02), but no brain region×sex (F (4,137) = 2. 0, p = 0. 09) or genotype×brain region×sex (F (12,137) = 1. 425, p = 0. 16) interactions. Therefore, we did not analyze sex differences for each brain region in each of the lines. The main effect of sex appeared to be driven by the fact that females tend to have slightly higher levels of V1aR binding in some brain regions. However, since there are equal numbers of males and females across groups, and our focus was on the impact of promoter elements on expression, we collapsed males and females into a single group. We then performed three separate ANOVAs to test the a priori hypotheses regarding 1) the role of the 5′ flanking region, 2) species differences in the microsatellite, and 3) intraspecies differences in the microsatellite. To address the first of these, we compared pvKI-long mice homozygous for this region with WT mice. pvKI-long mice showed an increase in V1aR binding in the ventral pallidum (VP), central amygdala (CeA), paraventricular nucleus of the thalamus (PVthal), and dentate gyrus (DG) of the hippocampus, consistent with the distribution in the prairie vole. Specifically, we compared V1aR binding in pvKI-long mice to WT mice, and identified a significant effect of both brain region (F (4,100) = 511. 6, p<0. 001) and genotype (F (4,100) = 79. 2, p<0. 001) on V1aR levels. In addition, there was a significant interaction between brain region and genotype (F (4,100) = 10. 6, p<0. 001), and simple main effects with Sidak-adjusted α showed that pvKI-long animals had significantly higher levels of V1aR than WT mice in the VP (p<0. 001), CeA (p<0. 001), PVThal (p<0. 001), and DG (p<0. 001), but not in the lateral septum (LS; p = 0. 24; Figure 3). While it is intriguing that there is a significant difference in binding in the VP of these two lines, the actual difference is quite modest (on average, 1. 15 fold higher). In addition, it should be noted that the binding in the dentate gyrus was distributed differently between prairie voles compared to pvKI-long mice, potentially due to different effects of the mouse versus vole coding sequences on receptor trafficking. However, the pvKI-long mice did not show the prairie vole specific binding in the laterodorsal thalamus (LDthal) or medial amygdala (MeA) (Figure 3). The overall similarities in binding pattern between the pvKI-long and WT mice demonstrate that elements outside of the replaced element (e. g. distal 5′ flanking regions, introns, and other surrounding elements) contribute significantly to species-typical expression, perhaps more so than the sequences in the 3. 4 kb regions that we tested. However, the quantitative differences between these two lines of mice demonstrate conclusively that the proximal 3. 4 kb of the 5′ flanking region also contributes to species-specific patterns of V1aR distribution in the brain. Having established that replacement of the 5′ flanking region contributes to differences in V1aR levels in the thalamus, amygdala, ventral pallidum, and hippocampus, we next investigated whether differences in the composition of the Avpr1a microsatellite might mediate species differences in V1aR binding within any of these regions. Specifically we compared V1aR binding in KI mice homozygous for either the prairie long (pvKI-long) or meadow vole (mvKI) Avpr1a microsatellite, and identified a significant effect of both brain region (F (4,77) = 114. 7, p<0. 001) and genotype (F (4,77) = 160. 9, p<0. 001) on V1aR levels. In addition, there was a significant interaction between brain region and genotype (F (4,77) = 74. 2, p<0. 001), and simple main effects with Sidak-adjusted α showed that pvKI-long animals had significantly higher levels of V1aR than mvKI animals in the CeA (p<0. 001), PVThal (p = 0. 002), and DG (p<0. 001), but not in the lateral septum (LS; p = 0. 68; Figure 4E) or ventral pallidum (VP; p = 0. 75; Figure 4E). Although data are not available directly comparing V1aR in these brain regions in meadow and prairie voles, meadow voles have an expression pattern that is similar to that of montane voles, and that comparison has previously been examined [27]. Table 1 shows the ratio of expression calculated for prairie∶montane voles derived from the binding values reported in table 1 from Wang et al. [44] compared with the binding ratio of the same regions in pvKI-long∶mvKI mice. These studies are independent and warrant care in drawing parallels, but overall, these ratios indicate that the binding differences between vole species are broadly mirrored in the thalamus, CeA, and DG but not the VP or LS in these mouse lines. Allelic variation in Avpr1a has also been tied to intra-species variation in V1aR patterns in prairie voles [17], [36], [37]. However, these studies could not distinguish direct effects of the microsatellite from the possibility that the microsatellite is in linkage disequilibrium with other functional elements. In order to determine the direct contribution of the microsatellite to individual differences in neural V1aR distributions, we compared V1aR binding patterns in mice homozygous for either the long (pvKI-long) or the short version (pvKI-short) of the prairie vole microsatellite in the VP, LS, CeA, PVthal, and DG. The prairie long and short form of the microsatellite are substantially more similar to each other than to the meadow microsatellite. As such, we predicted that the potential differences conferred by this region would be relatively subtle. A 2-way ANOVA revealed a main effect of both brain region (F (4,80) = 165. 0, p<0. 001) and genotype (F (4,80) = 12. 1, p = 0. 001) on V1aR levels (Figure 5E). In addition, there was a significant interaction between brain region and genotype (F (4,80) = 7. 8, p<0. 001), and simple main effects analysis with Sidak-adjusted α showed that pvKI-long mice had higher V1aR levels in the DG (p<0. 01) but not in the CeA (p = 0. 42), PVThal (p = 0. 96), LS (p = 0. 93) or VP (p = 0. 77; Figure 5). Although significant for the DG, the differences observed between these mice are less profound than reported for prairie voles with different microsatellite lengths, suggesting that while individual differences in microsatellite structure do directly impact expression in the brain, other linked polymorphisms may account for the larger number of regional differences found in prairie voles. While there is considerable evidence in mice and voles that variation in Avpr1a expression has behavioral consequences [24], [31], [32], [34], [45], we wanted to determine whether the variation in V1aR distribution in our KI lines contributed to variation in behavior. V1aR activation modulates a wide array of behaviors, and we used the existing literature on the role of V1aR and our binding data to guide our behavioral investigation. While variation in V1aR distribution in voles has been studied extensively with respect to social behavior, the brain regions showing line differences in our mice have not been implicated in regulating AVP-dependent social behaviors. Instead, we focused on changes in the hippocampus and the CeA — regions in which AVP and V1aR function has previously been studied in rats and mice [46]–[49]. Novel object recognition is a hippocampus-dependent task, and performance on this task is tied to differences in excitability of the dentate gyrus [50], [51]. Thus, we hypothesized that activation of V1aR in the hippocampus, which leads to increased firing rates [52], [53], might impact novel object recognition. All groups showed normal locomoter habituation upon repeated exposure to the novel object chamber (Figure 6A). A repeated measures ANOVA with the Greenhouse-Geisser F-test revealed a main effect of trial (F (3. 27,244. 5) = 196. 2; p<0. 001) but no interaction between trial and genotype (F (9. 65,244. 5) = 1. 64; p = 0. 097). In addition, all groups showed a preference of the novel object during the probe trial (Figure 6B), and no group differences were observed in the percent time spent investigating the novel object (one way ANOVA; F (3,486. 4) = 1. 29; p = 0. 30). A repeated measures ANOVA with the Greenhouse-Geisser F-test revealed a main effect of object (F (1,22197. 6) = 55. 15; p<0. 001) but no interaction between object and genotype (F (3,196. 4) = 0. 49; p = 0. 69). Post-hoc paired T-tests with Bonferroni correction indicate that all groups preferred the novel object (WT: t (37) = 5. 27, p<0. 001; mvKI: t (9) = 6. 77, p<0. 001); pvKI-short: t (11) = 3. 5, p = 0. 005; pvKI-Long: t (19) = 3. 67, p = 0. 002). In addition, V1aR in the CeA has been shown to modulate stress coping behavior in rats and mice. In particular, swim stress elicits release of AVP into this region, and localized V1aR receptor blockade increases the amount of time rodents spend struggling in the forced swim test [46], [47]. Thus in a separate cohort of mice, we tested stress coping behavior and hypothesized that pvKI mice (both long and short), which have higher levels of V1aR in the CeA than WT and mvKI mice, would show lower levels of active coping in the forced swim test. While struggling did not differ across WT mice from the three lines (F (42) = 0. 13, p = 0. 88), we found that pvKI-long and pvKI-short mice struggled less in the forced swim test than did their WT littermates (Figure 6C; t = −2. 35, p = 0. 02), consistent with what would be expected based on pharmacological studies. Microsatellite sequences have been hypothesized to act as evolutionary “tuning knobs, ” because they mutate at faster rates than other parts of the genome, potentially due to “slippage” of the DNA polymerase while copying these highly repetitive regions. To investigate the rates of mutation in the Avpr1a microsatellite, we compared the sequence of the microsatellite region in 6th and 7th generation animals to those of the founder animals (n = 17 pvKI-long, 15 pvKI-short, and 10 mvKI microsatellite alleles from individuals born to different parents). No spontaneous mutations occurred in the intervening generations. While mutation rates are species specific, this suggests that changes in the microsatellite sequence do not occur every generation, but rather on a longer evolutionary scale, which is in accordance with previously reported mutation rates of 10−2 to 10−5 mutations per locus per generation [54]. The mechanisms underlying microsatellite-mediated differences in Avpr1a expression are not known. Transcriptional differences may ultimately depend on a combination of differences in DNA secondary structure, epigenetic characteristics, and/or differential binding of transcriptional enhancers within the microsatellite-containing region [15]. In order to gain insight into the latter, we used the transcription factor prediction software, MatInspector, to investigate the sequences shown in Figure 1, which include both short tandem repeats and interspersed non-repetitive DNA, (Genomatix, AnnArbor, MI) [55], [56]. We used Matrix Family Library Version 8. 4 to match a database containing potential binding sites of 7018 vertebrate transcription factors to our sequences. MatInspector identified 21 potential TF binding sites in the meadow microsatellite, and 160 and 141 sites in the long and short allele, respectively. These sites corresponded with 21 different transcription factors potentially capable of binding to the meadow allele, and 60 for the long allele and 59 for the short allele. Comparison of these lists indicated that 4 transcription factors putatively bind the meadow microsatellite region but not the prairie alleles. In addition, we identified 5 factors that would uniquely bind to the prairie long allele, and 2 to the short allele. In order to further focus these lists, we examined their expression profiles using the Allen Brain Atlas [57], reasoning that any transcription factor responsible for differences in Avpr1a expression would need to be expressed within the brain. While most transcription factors showed at least moderate levels of expression in a few brain regions, one factor that putatively binds uniquely in the long microsatellite, Ras-responsive element binding protein 1 (Rreb1), was particularly notable because it is highly expressed within the dentate gyrus (Figure 1a). This corresponds with the differences in V1aR levels in the DG of pvKI-long versus pvKI-short mice. It should be noted that the Ras-responsive element is located in a non-repetitive sequence and is due to a G/A single nucleotide polymorphism rather than a VNTR polymorphism. In addition, we hypothesized that differences in the number of transcription binding sites may also be important for modulating V1aR levels. We compared the number of predicted binding sites identified in the long and short allele. Among transcription factors that putatively bind both the long and short allele, 11 factors had more potential binding sites in the short allele and 8 in the long allele. The most notable differences in the number of putative binding sites were attributable to variation in length of repetitive sequences. For instance, expansion of a GAGA tetra-nucleotide repeat in the long allele generates up to 23 additional opportunities for binding of the GAGA-binding factor, cKrox/th-POK while expansion of a TATA repeat in the short allele resulted in 6 additional binding opportunities for TATA-binding factors (Figure 1a). These analyses provide potential new avenues of research to better understand the transcription-factor based mechanisms that may underlie microsatellite-mediated differences in Avpr1a expression.
  Changes in transcriptional regulation are a primary driver of phenotypic evolution [58]. Here we demonstrate that the proximal 3. 4 kb of the 5′ flanking region of the rodent Avpr1a gene has only a modest impact on species-specific expression patterns, indicating that elements outside of this region are important for many expression differences. Further studies using targeting vectors incorporating elements downstream of that used here, including coding region, intron, and 3′ untranslated region would be useful to determine whether the species specific patterns seen in our previous transgenic mouse study were conferred by downstream elements. Studies examining the genetic regulation of oxytocin and AVP gene expression have revealed the important role of intronic or 3′ flanking regions for cell-type specific expression [59]–[63]. Alternatively, more distal 5′ flanking regions, or even chromosomal landscape may play an important role in determining species-specific expression patterns [64]. However, our data do confirm that both species differences and intra-species variation in microsatellite structure contribute to variation in gene expression. To our knowledge, this is the first demonstration that species differences and individual variation in microsatellite structure has a direct impact on the expression pattern of a behaviorally relevant gene. Our findings support the hypothesis that the instability of genetic elements proximal to genes may act as “evolutionary tuning knobs” to enhance the evolvability of traits through alteration of gene expression [14], [65], [66]. Microsatellite sequences typically mutate at faster rates than non-repetitive DNA [67], and unlike other forms of mutations, such as SNPs and indels, expansion or contraction of a microsatellite sequence is reversible [68]. Further, addition or subtraction of repeat units can exert small, quantitative effects on gene expression levels, such as those seen in the DG of pvKI-long and pvKI-short mice, leading to high gene expression divergence in a population of individuals carrying different microsatellite alleles. Repeat variation can alter gene expression via multiple mechanisms, including differential recruitment of transcriptional enhancers, altered secondary structure (e. g. bendability) of the DNA strand, and differences in epigenetic modifications that affect nucleosome binding [15]. Our results indicate that the Avpr1a microsatellite affects gene expression in multiple, but not all, brain regions. Because different mechanisms may underlie microsatellite-mediated expression changes in different brain regions, the inherent flexibility of phenotype conferred by repetitive sequences may be enhanced in the complex cellular environment of the brain, as compared to a single cell organism or a more homogenous tissue. It should be noted, though, that the differences in each of our comparisons between the lines created less divergence in V1aR binding than we anticipated, suggesting that other linked polymorphisms found outside of the microsatellite, as well as outside of the 3. 4 Kb 5′ flanking region are contributing to the more robust differences reported in the vole studies. Avpr1a is a particularly interesting locus for understanding the genomic mechanisms of phenotypic diversity, as it has been implicated in modulating social behavior in multiple species, including humans. An initial study reported that monogamous prairie and pine voles had longer Avpr1a microsatellites than nonmonogamous meadow and montane voles, suggesting that the presence of the microsatellite may have contributed to the evolution of the monogamous mating strategy in voles [24]. However, a subsequent survey of the Avpr1a locus in several other vole species and, more recently, in Peromyscus species did not support the hypothesis that the presence or absence of the microsatellite element was associated with monogamy [64], [69]. Nevertheless, more subtle differences in microsatellite structure may result in inter- and intraspecies differences in receptor expression, which could contribute to species differences in the expression of behaviors associated with monogamy [17], [70]. There is conclusive evidence that variation in Avpr1a expression contributes to variation in social behavior [17], [32], [34]. The present findings cannot confirm that variation in the microsatellite structure contributes to variation in social behavior in mice. Indeed, it is unlikely that social behaviors are significantly affected in our knock-in mice since the greatest alteration in V1aR expression were found in regions that have not been implicated in AVP-dependent social behavior. However, our results do support the more general hypothesis that variation in the Avpr1a microsatellite structure directly contributes to variation in V1aR density in a brain region specific manner. Similar VNTRs are found proximal to the primate AVPR1A gene, and differences in the presence and composition of these regions exists both within and between species [71]–[73]. In humans, at least 16 alleles exist for a complex microsatellite located upstream of AVPR1A, known as RS3 [72]. It is worth noting that the specific sequences and location of the human microsatellite are different from that found in voles, but this region represents an analogous genetic region with putatively enhanced mutation rates. Variation in the length of this region has been associated with differences in V1aR mRNA levels in post-mortem human hippocampus, similar to our findings in the prairie long and short KI lines [74]. In addition, RS3 allelic variation predicts amygdala reactivity in response to face presentation, a highly salient social stimulus for humans [75]. Genetic studies have suggested a role for variation in RS3 and other AVPR1A microsatellites in multiple aspects of human social behavior, including male pair bonding and relationship quality, and altruism [39], [40], [74], [76]–[78]. In addition, nominal associations between RS3 variants and autism, a disorder characterized by deficits in social behavior, have been reported [79]–[81]. Chimpanzees are polymorphic for an indel that includes RS3 [71], and the presence or absence of this VNTR-containing region is associated with differences in a variety of personality traits. In particular, males carrying the RS3-containing allele demonstrated higher levels of dominance traits and lower levels of conscientiousness than males that lacked RS3 [41]. Together, these studies suggest that microsatellite diversity affecting Avpr1a expression may be a general mechanism for generating behavioral diversity in primates as well as rodents. Our results suggest that variation in the microsatellite structure of Avpr1a can impact expression in the brain, but only to a modest extent, at least in mice. While we did not see an effect of the microsatellite on expression in regions associated with social behavior in our mice, it is conceivable that in the context the vole or human genome, similar microsatellite variation could have a larger impact on expression in regions involved in modulating social behavior, and thus could generate variation in the expression of behavior. Our results do suggest that the regulatory elements contributing to species-specific expression patterns are not confined to the proximal 5′ flanking sequence, and the regulation of species-specific expression patterns for this gene is more complex than we originally hypothesized. Future studies replacing larger stretches of the 5′ flanking region, exons and introns, or utilizing BAC transgenics may be able to further elucidate how species-specific patterns of gene expression in the brain are achieved.
  All animal protocols were approved by the Columbia University Internal Animal Care and Use Committee and were conducted in accordance with the National Institutes of Health Guide for Care and Use of Laboratory Animals. KI mice were generated using a targeting construct illustrated in Figure 2. The homology arms were amplified from a bacteria artificial chromosome (BAC) containing the C57Bl6/J Avpr1a locus using an enzyme mixture that includes both taq polymerase and a proof-reading polymerase (Epicentre Biotechnologies, Madison, WI). The homology arms were sequenced and the same homology arms were used in all three targeting constructs. Three versions of the prairie vole Avpr1a 5′ flanking region containing the meadow and prairie long and short microsatellite versions were isolated from previous expression constructs [82]. Specifically, because the three versions of the microsatellite were independently cloned into the same vector containing the prairie vole 5′ flanking region, this region for each construct was identical except for the structure of the microsatellite. This was confirmed by direct sequencing. A floxed PGK-Neo cassette was inserted upstream of the prairie 5′ flanking region and an HSV-tk cassette was placed downstream of the 3′ homology arm. The construct was linearized via digestion with Sbf1. The linearized construct was sent to Ingeneious Targeting (Stonybrook, NY) where it was electroporated into hybrid C57Bl/6J/129SV embryonic stem cells. DNA from neomycin resistant/gancyclovir-sensitive clones were screened via southern blot. Specifically, genomic DNA was digested with Acc651 and evidence of recombination was detected using a probe located upstream of the 5′ homology arm (Figure 2). This yielded a 9. 5 kb band in WT and a 5. 1 kb band in correctly targeted recombinant alleles. Positive recombinants were further verified using two internal southern probes, PCR, and sequencing. Correctly targeted recombinant stem cells were injected into blastocysts by Ingenious Targeting. Offspring of the chimeras carrying the targeted allele were crossed with mice expressing EIIa-Cre recombinase on a C57Bl6/J background. Because Cre-mediated recombination in this line is not 100% efficient, offspring were screened for deletion of the PGK-Neo cassette via PCR. All three lines were then bred to C57Bl/6J background for at least 5 generations. Animals were genotyped using the following primers: 5′ TACAAGTGAGTGGGCCTTTCCTGT and 5′ GAGCCTCGCGGGAAACTCAT for the WT allele (754 bp) and 5′ AGCTCTCTTCCATGCATTCGACCA and 5′ ACAGAAGCAACAGTGACCTTCCCT for the KI allele (334 bp) (Figure 2). Mice were housed in groups of 3–5 animals with mixed genotypes, had ad libitum access to food and water, and were maintained on a 12∶12 light∶dark cycle. Mouse lines were maintained separately and WT and KI experimental animals were derived from heterozygous breeding pairs in each line (pvKI-long+/−, pvKI-short+/−, mvKI+/−). N5 and N6 generation mice were euthanized between PND 60–70 via cervical dislocation followed by decapitation. Receptor autoradiography was performed as previously described [83]. Slide mounted sections at 100 mM intervals were thawed at room temperature for 1 hour, briefly fixed on 0. 1% paraformaldehyde for 2 minutes, rinsed twice with 50 mM Tris buffer (pH 7. 4), and incubated with 50 pM 125I-linear-AVP ligand [Phenylacetyl-DTyr (Me) -Phe-Gln-Asn-Arg-Pro-Arg-Tyr-NH2; Perkin Elmer, Waltham, MA] in buffer containing 50 mM Tris (pH = 7. 4), 10 mM MgCl, and 0. 1% BSA for 1 hour. The slides were then washed 4×5 min in 50 mM Tris buffer with 0. 2% MgCl at 4°C followed by a final 30 minute rinse in the same buffer at room temperature with agitation. Slides were rinsed briefly in double distilled water and allowed to dry overnight before exposure to BioMax MR film along with an ARC146-F 14C standard. Multiple exposures, ranging from 18 to 72 hours, were performed to ensure all regions of interest could be evaluated within the linear range of the film. All slides were processed simultaneously. Receptor densities were quantified by densitometry using MCID software as previously described [33]. Quantification was performed blind to genotype. Diagrammatic representative brain sections from Paxinos and Franklin (2008) were used to define anatomical regions. Briefly, for each region quantified, 3 serial sections were sampled bilaterally. Non-specific binding was calculated by selecting a background region not expressing V1aR for each section to account for potential section to section variation. Optical density was converted to pCi/region using the standard curve calculated from the co-exposed standard. Non-specific binding as subtracted from total binding to yield values for specific binding. Specific binding values were normalized to fold change relative to WT levels. Four WT animals for each line (n = 12 total) were pooled to generate a single WT group, derived from 9 independent litters from 7 breeder pairs. Eight knockin mice from each KI line were used, originating as follows: mvKI mice – 5 litters from 3 breeder pairs, pvKI-short mice – 5 litters from 4 breeder pairs, and pvKI-long mice – 6 litters from 3 breeder pairs. In each case, the groups were half male and half female. One mvKI individual was dropped from analysis of the CeA, PVThal, and DG V1aR levels due to tissue damage. All statistical calculations are presented as mean ± SEM, and were performed in SPSS version 19. We tested for line differences by comparing WT littermates of all 3 lines (pvWT-long, pvWT-short, and mvWT; n = 4/line) using a 2-way ANOVA with line and brain region (CeA, PVthal, DG, LS, VP) as factors. We found a significant effect of brain region (F (48) = 122. 2; p<0. 001), but no significant effect of line (pv-long, pv-short, mv) (F (48) = 1. 095; p = 0. 35), and no evidence of interaction between the two (F (48) = 0. 823, p = 0. 56). Based on these results, WT littermates from all three lines were grouped together in subsequent analyses as the WT comparison group. To compare V1aR density in the brains of mice with different KI genotypes, we again used 2-way ANOVAs with genotype and brain region as factors. When significant main effects of genotype or interactions were observed, we conducted a simple effects analysis for genotype using a Sidak corrected α to account for multiple comparisons.
summary: DNA sequence variation underlies many differences both within and between species. In this paper, we investigate a specific DNA sequence that is thought to influence expression of a gene that modulates behavior, the vasopressin V1a receptor gene (Avpr1a). Specifically, differences in the expression of V1a receptor in the brain have been causally tied to social behavior differences, but the genetic basis of these differences is not understood. Using transgenic mice, we investigate the role of DNA sequences upstream of this gene in generating species-specific and individual variation in Avpr1a expression. We find that, contrary to our expectation, this region has only a modest influence on differences in expression patterns across rodent species. This indicates that DNA elements outside of this region play a larger role in species-level differences in expression. We confirm that variation in Avpr1a expression mediated by this upstream region translates to differences in behavior. We also find that variable DNA sequences associated with repetitive motifs within this region subtly influence gene expression. Together these findings highlight the complexity of genetic mechanisms that influence diversity in brain receptor patterns and support the idea that variable repetitive elements can influence both species and individual differences in gene expression patterns.
title: The Relative Contribution of Proximal 5′ Flanking Sequence and Microsatellite Variation on Brain Vasopressin 1a Receptor (Avpr1a) Gene Expression and Behavior