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â¢ Mitochondrial DNA is found inside the mitochondria while nuclear DNA is found inside the nucleus of a cell. â¢ One cell contains approximately 99.75% of nuclear DNA and 0.25% of mitochondrial DNA.â¢ The mutation rate of mitochondrial DNA is nearly twenty times faster than that of nuclear DNA.he uniqueness of mitochondrial DNA is that it is maternally inherited as a linked set of genes, passed on to progeny in the cytoplasm of the egg cell; thus no recombination between maternal and paternal genomes occurs.
Most significant is the lack of a nucleus in prokaryotic cells as well as membrane-based organelles found in all eukaryotic cells. Both have DNA, but eukaryote-DNA contain histones and chromosomes in a linear structure.Mitochondria (or the plant equivalent chloroplasts) is one of the many membrane-bound organelles present in eukaryotes, along with: 1  Nucleus. 2  Nucleoli. 3  Cytoskeleton. 4  Endoplasmic Reticulum. 5  Golgi Complex.oth have DNA, but eukaryote-DNA contain histones and chromosomes in a linear structure. Mitochondria (or the plant equivalent chloroplasts) is one of the many membrane-bound organelles present in eukaryotes, along with: 1  Nucleus. 2  Nucleoli. 3  Cytoskeleton. 4  Endoplasmic Reticulum.