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â¢ Mitochondrial DNA is found inside the mitochondria while nuclear DNA is found inside the nucleus of a cell. â¢ One cell contains approximately 99.75% of nuclear DNA and 0.25% of mitochondrial DNA.â¢ The mutation rate of mitochondrial DNA is nearly twenty times faster than that of nuclear DNA.he uniqueness of mitochondrial DNA is that it is maternally inherited as a linked set of genes, passed on to progeny in the cytoplasm of the egg cell; thus no recombination between maternal and paternal genomes occurs.
When the DNA begins to undergo mitosis the chromatin condenses to form the chromosome. The difference between chromatin and chromosomes is that  chromosomes help to make up chromatin. Chromatin is made up of DNA  and proteins, and is what makes the nucleus of a cell.Chromosomes  make up the DNA.hromatin is wound up DNA, and chromosomes are what DNA look like when a cell is getting ready to divide. Chromosomes are also symmetrical, and they have the same DNA on each side.