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â¢ Mitochondrial DNA is found inside the mitochondria while nuclear DNA is found inside the nucleus of a cell. â¢ One cell contains approximately 99.75% of nuclear DNA and 0.25% of mitochondrial DNA.â¢ The mutation rate of mitochondrial DNA is nearly twenty times faster than that of nuclear DNA.he uniqueness of mitochondrial DNA is that it is maternally inherited as a linked set of genes, passed on to progeny in the cytoplasm of the egg cell; thus no recombination between maternal and paternal genomes occurs.
What is the difference between Nucleus and Nucleoid? â¢ Nucleus is the structure where Eukaryotes store their genetic material while nucleoid is the place where Prokaryotes store their genetic material. â¢ Nucleus is large and well organized, whereas nucleoid is small and poorly organized.