Lyme disease is caused by a spirochete, Borrelia burgdorferi. A spirochete is a type of bacterium. Lyme disease is transmitted to dogs through the bite of a tick. Once in the blood stream, the Lyme disease organism is carried to many parts of the body and is likely to localize in joints.
encephalopathy is a general term describing a disease that affects the function or structure of your brain there are many types of encephalopathy and brain disease some types are permanent and some are temporary
Encephalopathy may be due to a birth defect (a genetic abnormality causing abnormal brain structure or chemical activity with symptoms being found at birth), or it may be evident towards the end of life due to disease, such as dementia or Alzheimer's disease.