parameters: (scriptFile, workflowModulePath, workflowClassName, primaryConfigSection, configSections, pythonBin=None)
docstring: This function generates the python workflow runscript
  
      The auto-generated python script presents the user with options to
      run and/or continue their workflow, and reads all workflow
      configuration info from an ini file.
  
      scriptFile -- file name of the runscript to create
      workflowModulePath -- the python module containing the workflow class
      workflowClassName -- the workflow class name
      primaryConfigSection -- the section used to create the primary workflow parameter object
      configSections -- a hash or hashes representing all configuration info
      @param pythonBin: optionally specify a custom python interpreter for the script she-bang
docstring_summary: This function generates the python workflow runscript
docstring_tokens: This function generates the python workflow runscript
function: def makeRunScript(scriptFile, workflowModulePath, workflowClassName, primaryConfigSection, configSections, pythonBin=None) :
      """
      This function generates the python workflow runscript
  
      The auto-generated python script presents the user with options to
      run and/or continue their workflow, and reads all workflow
      configuration info from an ini file.
  
      scriptFile -- file name of the runscript to create
      workflowModulePath -- the python module containing the workflow class
      workflowClassName -- the workflow class name
      primaryConfigSection -- the section used to create the primary workflow parameter object
      configSections -- a hash or hashes representing all configuration info
      @param pythonBin: optionally specify a custom python interpreter for the script she-bang
      """
  
      assert os.path.isdir(os.path.dirname(scriptFile))
      assert os.path.isfile(workflowModulePath)
  
      workflowModulePath=os.path.abspath(workflowModulePath)
      workflowModuleDir=os.path.dirname(workflowModulePath)
      workflowModuleName=os.path.basename(workflowModulePath)
      pyExt=".py"
      if workflowModuleName.endswith(pyExt) :
          workflowModuleName=workflowModuleName[:-len(pyExt)]
  
      # dump inisections to a file
      pickleConfigFile=scriptFile+".config.pickle"
      pickleConfigSections(pickleConfigFile,configSections)
  
      sfp=open(scriptFile,"w")
  
      if pythonBin is None :
          pythonBin="/usr/bin/env python2"
  
      sfp.write(runScript1 % (pythonBin, " ".join(sys.argv),workflowModuleDir,workflowModuleName,workflowClassName))
  
      sfp.write('\n')
      sfp.write(runScript2)
      sfp.write('\n')
      sfp.write(runScript3)
      sfp.write('\n')
  
      sfp.write('main(r"%s","%s",%s)\n' % (pickleConfigFile, primaryConfigSection, workflowClassName))
      sfp.write('\n')
      sfp.close()
      os.chmod(scriptFile,0755)
function_tokens: def makeRunScript ( scriptFile , workflowModulePath , workflowClassName , primaryConfigSection , configSections , pythonBin = None ) : assert os . path . isdir ( os . path . dirname ( scriptFile ) ) assert os . path . isfile ( workflowModulePath ) workflowModulePath = os . path . abspath ( workflowModulePath ) workflowModuleDir = os . path . dirname ( workflowModulePath ) workflowModuleName = os . path . basename ( workflowModulePath ) pyExt = ".py" if workflowModuleName . endswith ( pyExt ) : workflowModuleName = workflowModuleName [ : - len ( pyExt ) ] # dump inisections to a file pickleConfigFile = scriptFile + ".config.pickle" pickleConfigSections ( pickleConfigFile , configSections ) sfp = open ( scriptFile , "w" ) if pythonBin is None : pythonBin = "/usr/bin/env python2" sfp . write ( runScript1 % ( pythonBin , " " . join ( sys . argv ) , workflowModuleDir , workflowModuleName , workflowClassName ) ) sfp . write ( '\n' ) sfp . write ( runScript2 ) sfp . write ( '\n' ) sfp . write ( runScript3 ) sfp . write ( '\n' ) sfp . write ( 'main(r"%s","%s",%s)\n' % ( pickleConfigFile , primaryConfigSection , workflowClassName ) ) sfp . write ( '\n' ) sfp . close ( ) os . chmod ( scriptFile , 0755 )