# Path: pyani/pyani_config.py
# SGE_WAIT = 0.01  # Base unit of time (s) to wait between polling SGE


import os
import time
from typing import Any, Dict, List, Optional
from .pyani_config import SGE_WAIT
                    'barargs': ['a','b','c','d']}
        """
        self.name = name  # Set JobQueue name
        self.queue = queue  # Set SGE queue to request
        self.command = command  # Set command string
        self.dependencies = []  # type: List[Any]
        self.submitted = False  # type: bool
        self.finished = False  # type: int
        if arguments is not None:
            self.arguments = arguments  # Dictionary of arguments for command
        else:
            self.arguments = {}
        self.generate_script()  # Make SGE script for sweep/array

    def generate_script(self) -> None:
        """Create the SGE script that will run the jobs in the JobGroup."""
        self.script = ""  # type: str
        total = 1  # total number of jobs in this group

        # for now, SGE_TASK_ID becomes TASK_ID, but we base it at zero
        self.script += """let "TASK_ID=$SGE_TASK_ID - 1"\n"""

        # build the array definitions
        for key in sorted(self.arguments.keys()):
            # The keys are sorted for py3.5 compatibility with tests
            values = self.arguments[key]
            line = "%s_ARRAY=( " % (key)
            for value in values:
                line += value
                line += " "

# Path: pyani/pyani_config.py
# SGE_WAIT = 0.01  # Base unit of time (s) to wait between polling SGE


# Path: pyani/pyani_jobs.py
import os
import time
from typing import Any, Dict, List, Optional
from .pyani_config import SGE_WAIT

                    'barargs': ['a','b','c','d']}
        """
        self.name = name  # Set JobQueue name
        self.queue = queue  # Set SGE queue to request
        self.command = command  # Set command string
        self.dependencies = []  # type: List[Any]
        self.submitted = False  # type: bool
        self.finished = False  # type: int
        if arguments is not None:
            self.arguments = arguments  # Dictionary of arguments for command
        else:
            self.arguments = {}
        self.generate_script()  # Make SGE script for sweep/array

    def generate_script(self) -> None:
        """Create the SGE script that will run the jobs in the JobGroup."""
        self.script = ""  # type: str
        total = 1  # total number of jobs in this group

        # for now, SGE_TASK_ID becomes TASK_ID, but we base it at zero
        self.script += """let "TASK_ID=$SGE_TASK_ID - 1"\n"""

        # build the array definitions
        for key in sorted(self.arguments.keys()):
            # The keys are sorted for py3.5 compatibility with tests
            values = self.arguments[key]
            line = "%s_ARRAY=( " % (key)
            for value in values:
                line += value
                line += " "

            line += " )\n"