# Path: alfpy/graphdna.py
# def _2DSGraphVector(seq):
# def _2DMGraphVector(seq, n):
# def _2DNGraphVector(genomeseq):
# def create_2DSGraphVectors(seq_records):
# def create_2DMGraphVectors(seq_records, n):
# def create_2DNGraphVectors(seq_records):
#     def __init__(self, vector, disttype='euclid_norm'):
# def main():
# class Distance(distance.Distance):
# 
# Path: alfpy/utils/distmatrix.py
# def create(id_list, distance):
# def read_highcharts_matrix(id_list, data):
#     def __init__(self, id_list, data):
#     def normalize(self):
#     def __iter__(self):
#     def writer(self, handle, f, decimal_places):
#     def display(self, f="phylip", decimal_places=7):
#     def write_to_file(self, handle, f="phylip", decimal_places=7):
#     def highcharts(self):
#     def format(self, decimal_places=7):
#     def min(self):
#     def max(self):
#     def is_zero(self):
#     def __repr__(self):
# class Matrix():
# 
# Path: alfpy/utils/seqrecords.py
# class SeqRecords:
#     def __init__(self, id_list=None, seq_list=None):
#     def add(self, seqid, seq):
#     def fasta(self, wrap=70):
#     def length_list(self):
#     def __iter__(self):
#     def __len__(self):
#     def __repr__(self):
# def read_fasta(handle):
# def main():
# 
# Path: alfpy/version.py



import argparse
import sys
from alfpy import graphdna
from alfpy.utils import distmatrix
from alfpy.utils import seqrecords
from alfpy.version import __version__
#! /usr/bin/env python

# Copyright (c) 2016 Zielezinski A, combio.pl




def get_parser():
    parser = argparse.ArgumentParser(
        description='''Calculate distance between DNA sequences based on

# Path: alfpy/graphdna.py
# def _2DSGraphVector(seq):
# def _2DMGraphVector(seq, n):
# def _2DNGraphVector(genomeseq):
# def create_2DSGraphVectors(seq_records):
# def create_2DMGraphVectors(seq_records, n):
# def create_2DNGraphVectors(seq_records):
#     def __init__(self, vector, disttype='euclid_norm'):
# def main():
# class Distance(distance.Distance):
# 
# Path: alfpy/utils/distmatrix.py
# def create(id_list, distance):
# def read_highcharts_matrix(id_list, data):
#     def __init__(self, id_list, data):
#     def normalize(self):
#     def __iter__(self):
#     def writer(self, handle, f, decimal_places):
#     def display(self, f="phylip", decimal_places=7):
#     def write_to_file(self, handle, f="phylip", decimal_places=7):
#     def highcharts(self):
#     def format(self, decimal_places=7):
#     def min(self):
#     def max(self):
#     def is_zero(self):
#     def __repr__(self):
# class Matrix():
# 
# Path: alfpy/utils/seqrecords.py
# class SeqRecords:
#     def __init__(self, id_list=None, seq_list=None):
#     def add(self, seqid, seq):
#     def fasta(self, wrap=70):
#     def length_list(self):
#     def __iter__(self):
#     def __len__(self):
#     def __repr__(self):
# def read_fasta(handle):
# def main():
# 
# Path: alfpy/version.py



# Path: bin/calc_graphdna.py
import argparse
import sys
from alfpy import graphdna
from alfpy.utils import distmatrix
from alfpy.utils import seqrecords
from alfpy.version import __version__

#! /usr/bin/env python

# Copyright (c) 2016 Zielezinski A, combio.pl




def get_parser():
    parser = argparse.ArgumentParser(
        description='''Calculate distance between DNA sequences based on

        the two-dimensional (2D) graphical DNA curve''',