OpenCGA main command line sets too many Storage arguments
The following opencga-storage arguments should not be set by the main OpenCGA command line:
- include-genotypes
- compress-genotypes
- include-stats

diff --git a/opencga-analysis/src/main/java/org/opencb/opencga/analysis/storage/AnalysisFileIndexer.java b/opencga-analysis/src/main/java/org/opencb/opencga/analysis/storage/AnalysisFileIndexer.java
index e0ab3801c3..f90a1bd147 100644
--- a/opencga-analysis/src/main/java/org/opencb/opencga/analysis/storage/AnalysisFileIndexer.java
+++ b/opencga-analysis/src/main/java/org/opencb/opencga/analysis/storage/AnalysisFileIndexer.java
@@ -285,9 +285,6 @@ public class AnalysisFileIndexer {
                     .append(" --database ").append(dbName)
                     .append(" --input ").append(catalogManager.getFileUri(file))
                     .append(" --outdir ").append(outDirUri)
-                    .append(" --include-genotypes ")
-                    .append(" --compress-genotypes ")
-                    .append(" --include-stats ")
 //                    .append(" --sample-ids ").append(sampleIdsString)
 //                    .append(" --credentials ")
                     ;
['opencga-analysis/src/main/java/org/opencb/opencga/analysis/storage/AnalysisFileIndexer.java']