### A Pluto.jl notebook ###
# v0.18.0

using Markdown
using InteractiveUtils

# ╔═╡ 6b1ad54f-61e4-490d-9032-7a557e8dc82f
md"""
## CHEME 5440/7770: Structural Analysis of the Urea Cycle Network (PS2)
"""

# ╔═╡ 7057c8e4-9e94-4a28-a885-07f5c96ebe39
html"""
<p style="font-size:20px;">Student name, Student name, Student name ... Student name</br>
Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca NY 14850</p>
"""

# ╔═╡ 87a183bc-3857-4189-8103-18c46ff3245d
md"""
#### Build the stoichiometric array
"""

# ╔═╡ 5338451e-3c4b-4030-bbbb-42eaf4209a89
begin

	# fill me in
	# ...
	
end

# ╔═╡ 6970dab5-16bd-4898-b88d-723cb1b3d89e
md"""
#### Convex analysis: extreme pathways
"""

# ╔═╡ 97b0763d-dcab-4afa-b660-52e18b3d523f
begin

	# fill me in
	# ...
	
end

# ╔═╡ b473b17e-3bf5-4b6c-af24-fe57b5a7e7e9
md"""
#### Metabolite connectivity array (MCA)
"""

# ╔═╡ 999ae1fd-5341-4f66-9db2-dec53fa0cd49


# ╔═╡ b7e5d1a6-57ed-4d09-a039-a4bd12386367
md"""
#### Reaction connectivity array (RCA)
"""

# ╔═╡ 4520fc6e-7305-487e-924d-af22406e6d45
begin

	# fill me in ...
end

# ╔═╡ 267865de-1b5c-4579-861b-c6c46beb4739
function ingredients(path::String)
	
	# this is from the Julia source code (evalfile in base/loading.jl)
	# but with the modification that it returns the module instead of the last object
	name = Symbol("lib")
	m = Module(name)
	Core.eval(m,
        Expr(:toplevel,
             :(eval(x) = $(Expr(:core, :eval))($name, x)),
             :(include(x) = $(Expr(:top, :include))($name, x)),
             :(include(mapexpr::Function, x) = $(Expr(:top, :include))(mapexpr, $name, x)),
             :(include($path))))
	m
end

# ╔═╡ 67f5db98-88d0-11ec-27ac-b57538a166f4
begin
	# import some packages -
	using PlutoUI
	using PrettyTables
	using LinearAlgebra
	
	# setup paths -
	const _PATH_TO_NOTEBOOK = pwd()
	const _PATH_TO_SRC = joinpath(_PATH_TO_NOTEBOOK,"src")

	# load the PS2 code lib -
	lib = ingredients(joinpath(_PATH_TO_SRC, "Include.jl"));

	# return -
	nothing
end

# ╔═╡ ab2bcfd5-3ba7-4388-8a3c-2cb95fba989a
html"""
<style>
main {
    max-width: 900px;
    width: 75%;
    margin: auto;
    font-family: "Roboto, monospace";
}

a {
    color: blue;
    text-decoration: none;
}
</style>"""

# ╔═╡ 00000000-0000-0000-0000-000000000001
PLUTO_PROJECT_TOML_CONTENTS = """
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PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"

[compat]
PlutoUI = "~0.7.34"
PrettyTables = "~1.3.1"
"""

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# ╔═╡ Cell order:
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