module Perfusion

include("utils.jl")
export @extract, interquartile_mean, percent_error, apply_mask, crop

using DICOM
include("load_dicom.jl")
export load_vfa_dicom, load_dce_dicom

using LinearAlgebra: norm
using LsqFit
using Statistics: mean
include("relaxation.jl")
export signal_to_concentration,
    concentration_to_signal,
    signal_to_R1,
    R1_to_signal,
    concentration_to_R1,
    R1_to_concentration
export fit_relaxation, fit_relaxation_nls, fit_relaxation_despot, fit_relaxation_novifast

using SpecialFunctions: gamma
include("aif.jl")
export aif_biexponential, aif_fritzhansen, aif_weinmann
export aif_orton1, aif_orton2, aif_orton3
export aif_georgiou, aif_parker

using LsqFit
using NamedTupleTools: select
using NumericalIntegration: cumul_integrate, TrapezoidalFast
using Statistics: mean, quantile, std
include("model_fitting.jl")
export model_tofts, model_exchange, model_filtration, model_uptake
export fit_model
export fit_tofts_nls, fit_tofts_lls
export fit_extendedtofts_nls, fit_extendedtofts_lls
export fit_uptake_nls, fit_uptake_lls
export fit_exchange_nls, fit_exchange_lls
export fit_filtration_nls, fit_filtration_lls
export fit_rrm_nls, fit_rrm_lls, fit_crrm_nls, fit_crrm_lls
export fit_errm_lls, fit_cerrm_lls
export fit_rrift, fit_rrift_with_crrm, fit_rrift_with_cerrm

using CancerImagingArchive
include("invivo_demo.jl")

end # module
