from typing import List, Optional, Tuple, Union import torch import torch.nn as nn from torch.nn import CrossEntropyLoss from transformers import AutoConfig, AutoModelForCausalLM, \ LlamaConfig, LlamaModel, LlamaForCausalLM from transformers.modeling_outputs import CausalLMOutputWithPast from PIL import Image from abc import ABC, abstractmethod import os import math from transformers import CLIPVisionModel, CLIPImageProcessor, CLIPVisionConfig from functools import partial from transformers.configuration_utils import PretrainedConfig from timm.models.layers import LayerNorm, LayerNorm2d from timm.models.regnet import RegStage from torch.nn import functional as F import math from einops import rearrange CONTROLLER_HEART_BEAT_EXPIRATION = 30 WORKER_HEART_BEAT_INTERVAL = 15 LOGDIR = "." # Model Constants IGNORE_INDEX = -100 IMAGE_TOKEN_INDEX = -200 DEFAULT_IMAGE_TOKEN = "" DEFAULT_IMAGE_PATCH_TOKEN = "" DEFAULT_IM_START_TOKEN = "" DEFAULT_IM_END_TOKEN = "" class CLIPVisionTower(nn.Module): def __init__(self, vision_tower, args, delay_load=False): super().__init__() self.is_loaded = False self.vision_tower_name = vision_tower self.select_layer = args.mm_vision_select_layer self.select_feature = getattr(args, 'mm_vision_select_feature', 'patch') if not delay_load: self.load_model() else: self.cfg_only = CLIPVisionConfig.from_pretrained(self.vision_tower_name) def load_model(self): self.image_processor = CLIPImageProcessor.from_pretrained(self.vision_tower_name) self.vision_tower = CLIPVisionModel.from_pretrained(self.vision_tower_name) self.vision_tower.requires_grad_(False) self.is_loaded = True def feature_select(self, image_forward_outs): image_features = image_forward_outs.hidden_states[self.select_layer] if self.select_feature == 'patch': image_features = image_features[:, 1:] elif self.select_feature == 'cls_patch': image_features = image_features else: raise ValueError(f'Unexpected select feature: {self.select_feature}') return image_features @torch.no_grad() def forward(self, images): if type(images) is list: image_features = [] for image in images: image_forward_out = self.vision_tower(image.to(device=self.device, dtype=self.dtype).unsqueeze(0), output_hidden_states=True) image_feature = self.feature_select(image_forward_out).to(image.dtype) image_features.append(image_feature) else: image_forward_outs = self.vision_tower(images.to(device=self.device, dtype=self.dtype), output_hidden_states=True) image_features = self.feature_select(image_forward_outs).to(images.dtype) return image_features @property def dummy_feature(self): return torch.zeros(1, self.hidden_size, device=self.device, dtype=self.dtype) @property def dtype(self): return self.vision_tower.dtype @property def device(self): return self.vision_tower.device @property def config(self): if self.is_loaded: return self.vision_tower.config else: return self.cfg_only @property def hidden_size(self): return self.config.hidden_size @property def num_patches(self): return (self.config.image_size // self.config.patch_size) ** 2 def build_vision_tower(vision_tower_cfg, **kwargs): vision_tower = getattr(vision_tower_cfg, 'mm_vision_tower', getattr(vision_tower_cfg, 'vision_tower', None)) is_absolute_path_exists = os.path.exists(vision_tower) if is_absolute_path_exists or vision_tower.startswith("openai") or vision_tower.startswith("laion"): return CLIPVisionTower(vision_tower, args=vision_tower_cfg, **kwargs) raise ValueError(f'Unknown vision tower: {vision_tower}') class HoneybeeVisualProjectorConfig(PretrainedConfig): model_type = "mllm_visual_projector" def __init__( self, projector_type: str = "resampler", hidden_size: int = 1024, # num_hidden_layers: int = 6, # num_attention_heads: int = 16, # intermediate_size: int = 4096, # attention_probs_dropout_prob: float = 0.1, # initializer_range: float = 0.02, layer_norm_eps: float = 1e-6, # encoder_hidden_size: int = 1024, # This will be overwritten by vision_model's hidden_size pos_emb=False, feature_layer_index=-1, # vision feature layer index; -1: last layer num_eos_tokens=1, use_cls=True, prenorm=False, **kwargs, ): super().__init__(**kwargs) self.projector_type = projector_type self.hidden_size = hidden_size self.num_hidden_layers = num_hidden_layers self.num_attention_heads = num_attention_heads self.intermediate_size = intermediate_size self.attention_probs_dropout_prob = attention_probs_dropout_prob self.initializer_range = initializer_range self.layer_norm_eps = layer_norm_eps self.encoder_hidden_size = encoder_hidden_size self.pos_emb = pos_emb self.feature_layer_index = feature_layer_index self.num_eos_tokens = num_eos_tokens self.use_cls = use_cls self.prenorm = prenorm @classmethod def from_pretrained( cls, pretrained_model_name_or_path: Union[str, os.PathLike], **kwargs ) -> "PretrainedConfig": config_dict, kwargs = cls.get_config_dict(pretrained_model_name_or_path, **kwargs) # get the visual_projector config dict if we are loading from HoneybeeConfig if config_dict.get("model_type") == "QH_360VL": config_dict = config_dict["visual_projector_config"] return cls.from_dict(config_dict, **kwargs) def build_pos_embeds( config: HoneybeeVisualProjectorConfig, num_input_tokens: int, vision_hidden_size: int ): # pos emb # true if config.pos_emb: pos_emb = torch.nn.Parameter(torch.zeros(1, num_input_tokens, vision_hidden_size)) nn.init.trunc_normal_(pos_emb, mean=0.0, std=0.02) else: pos_emb = None return pos_emb def build_eos_tokens(config: HoneybeeVisualProjectorConfig, output_hidden_size: int): # think tokens num_eos_tokens = config.num_eos_tokens # 0 if num_eos_tokens: eos_tokens = torch.nn.Parameter(torch.randn(1, num_eos_tokens, output_hidden_size)) nn.init.trunc_normal_(eos_tokens, mean=0.0, std=config.initializer_range) else: eos_tokens = None return eos_tokens def build_prenorm(config: HoneybeeVisualProjectorConfig): # false if config.prenorm: prenorm = LayerNorm(config.encoder_hidden_size) else: prenorm = None return prenorm def build_mlp(depth, hidden_size, output_hidden_size): layers = [nn.Linear(hidden_size, output_hidden_size)] for _ in range(1, depth): layers.append(nn.SiLU()) layers.append(nn.Linear(output_hidden_size, output_hidden_size)) return nn.Sequential(*layers) def get_abs_pos(abs_pos, tgt_size): # abs_pos: L, C # tgt_size: M # return: M, C # 16,24 src_size = int(math.sqrt(abs_pos.size(1))) # 32,48 tgt_size = int(math.sqrt(tgt_size)) dtype = abs_pos.dtype if src_size != tgt_size: return F.interpolate( abs_pos.float().reshape(1, src_size, src_size, -1).permute(0, 3, 1, 2), size=(tgt_size, tgt_size), mode="bicubic", align_corners=False, ).permute(0, 2, 3, 1).flatten(0, 2).to(dtype=dtype) else: return abs_pos class Projector(nn.Module): """Base projector class""" def __init__( self, config: HoneybeeVisualProjectorConfig, num_input_tokens: int, output_hidden_size: int, ): super().__init__() self.config = config self.num_input_tokens = num_input_tokens self.output_hidden_size = output_hidden_size # think tokens self.eos_tokens = build_eos_tokens(config, output_hidden_size) # pos emb self.pos_emb = build_pos_embeds(config, num_input_tokens, config.encoder_hidden_size) self.prenorm = build_prenorm(config) self.build_net() def build_net(self): raise NotImplementedError() def _forward(self, x): raise NotImplementedError() def forward(self, x: torch.Tensor) -> torch.Tensor: """ Args: x: (B, L, encoder_hidden_size) tensor from the visual backbone (CLIP visual encoder), including cls token. """ if self.prenorm is not None: x = self.prenorm(x) if self.pos_emb is not None: # self.pos_emb = self.pos_emb[:,1:] pos_emb = get_abs_pos(self.pos_emb[:,1:], x.size(1)) pos_emb = pos_emb.to(device=x.device) x += pos_emb x = self._forward(x) # (B, L, output_hidden_size) B = x.size(0) if self.eos_tokens is not None: x = torch.cat([x, self.eos_tokens.expand(B, -1, -1)], dim=1) return x class ConvProjector(Projector): def _forward(self, x): # x: [B, L, dim] # x = x[:, 1:] # drop cls token and 2d forward hw = int(x.size(1) ** 0.5) x = rearrange(x, "b (h w) d -> b d h w", h=hw, w=hw) x = self.net(x) x = rearrange(x, "b d h w -> b (h w) d") x = self.readout(x) return x class CAbstractor(ConvProjector): """C-Abstractor""" def build_net(self): encoder_hidden_size = self.config.encoder_hidden_size hidden_size = self.config.hidden_size output_hidden_size = self.output_hidden_size depth = self.config.depth mlp_depth = self.config.mlp_depth n_queries = self.config.num_queries assert (n_queries ** 0.5).is_integer(), "n_queries must be square number" hw = int(n_queries ** 0.5) # RegBlock = ResBlock + SE RegBlock = partial( RegStage, stride=1, dilation=1, act_layer=nn.SiLU, norm_layer=LayerNorm2d, ) s1 = RegBlock( depth, encoder_hidden_size, hidden_size, ) sampler = nn.AdaptiveAvgPool2d((hw, hw)) s2 = RegBlock( depth, hidden_size, hidden_size, ) self.net = nn.Sequential(s1, sampler, s2) self.readout = build_mlp(mlp_depth, hidden_size, output_hidden_size) class IdentityMap(nn.Module): def __init__(self): super().__init__() def forward(self, x, *args, **kwargs): return x @property def config(self): return {"mm_projector_type": 'identity'} class SimpleResBlock(nn.Module): def __init__(self, channels): super().__init__() self.pre_norm = nn.LayerNorm(channels) self.proj = nn.Sequential( nn.Linear(channels, channels), nn.GELU(), nn.Linear(channels, channels) ) def forward(self, x): x = self.pre_norm(x) return x + self.proj(x) def build_honeybee_projector(config, projector_type, num_tokens,lm_hidden_size): """Build projector (abstractor) and query_tokens (optionally for resampler)""" proj_config = config proj_type = projector_type num_tokens = num_tokens output_hidden_size = lm_hidden_size # LM hidden size abstractor = { "c-abs": CAbstractor, }[ proj_type ](proj_config, num_tokens, output_hidden_size) return abstractor def build_vision_projector(config, delay_load=False, **kwargs): projector_type = getattr(config, 'mm_projector_type', 'linear') if projector_type == 'linear': return nn.Linear(config.mm_hidden_size, config.hidden_size) if projector_type == 'c-abs': local_config_path = config.mm_projector_config honeybee_config = HoneybeeVisualProjectorConfig.from_pretrained(local_config_path) num_tokens = config.mm_num_tokens lm_hidden_size = config.hidden_size abstractor = build_honeybee_projector(honeybee_config,projector_type,num_tokens,lm_hidden_size) return abstractor mlp_gelu_match = re.match(r'^mlp(\d+)x_gelu$', projector_type) if mlp_gelu_match: mlp_depth = int(mlp_gelu_match.group(1)) modules = [nn.Linear(config.mm_hidden_size, config.hidden_size)] for _ in range(1, mlp_depth): modules.append(nn.GELU()) modules.append(nn.Linear(config.hidden_size, config.hidden_size)) return nn.Sequential(*modules) if projector_type == 'identity': return IdentityMap() raise ValueError(f'Unknown projector type: {projector_type}') class QH360_VL_MetaModel: def __init__(self, config): super(QH360_VL_MetaModel, self).__init__(config) if hasattr(config, "mm_vision_tower"): self.vision_tower = build_vision_tower(config, delay_load=True) self.mm_projector_ctt = build_vision_projector(config) self.mm_projector_ori = build_vision_projector(config) def get_vision_tower(self): vision_tower = getattr(self, 'vision_tower', None) if type(vision_tower) is list: vision_tower = vision_tower[0] return vision_tower class QH360_VL_MetaForCausalLM(ABC): @abstractmethod def get_model(self): pass def get_vision_tower(self): return self.get_model().get_vision_tower() def encode_images(self, images): image_features = self.get_model().get_vision_tower()(images) image_features = self.get_model().mm_projector(image_features) return image_features def encode_images_noprojector(self, images): image_features = self.get_model().get_vision_tower()(images) image_features = image_features.detach() return image_features def prepare_inputs_labels_for_multimodal( self, input_ids, attention_mask, past_key_values, labels, images ): vision_tower = self.get_vision_tower() if vision_tower is None or images is None or input_ids.shape[1] == 1: if past_key_values is not None and vision_tower is not None and images is not None and input_ids.shape[1] == 1: attention_mask = torch.ones((attention_mask.shape[0], past_key_values[-1][-1].shape[-2] + 1), dtype=attention_mask.dtype, device=attention_mask.device) return input_ids, attention_mask, past_key_values, None, labels if type(images) is list or images.ndim == 5: image_features = [] for image in images: if image.ndim == 3: image_features.append(self.encode_images(image.unsqueeze(0)).squeeze(0)) elif image.ndim == 4: #NOTE cc-plan temp_feats = self.encode_images_noprojector(image) src_size = int(math.sqrt(temp_feats.shape[1])) temp_feats = temp_feats.reshape(temp_feats.shape[0]//5,5,-1, temp_feats.shape[-1]) x1 = temp_feats[:,4,:,:] x = temp_feats[:,:4,:,:] x = x.reshape(x.shape[0], -1, src_size, src_size, x.shape[-1]) x = x.transpose(1,2).reshape(x.shape[0], src_size,2,2, src_size, x.shape[-1]) x = x.transpose(1,2).reshape(x.shape[0], -1, x.shape[-1]) x1 = self.get_model().mm_projector_ori(x1).squeeze(0) x = self.get_model().mm_projector_ctt(x).squeeze(0) temp_feats_all = torch.cat([x,x1],dim=0) image_features.append(temp_feats_all) else: image_features = self.encode_images(images) new_input_embeds = [] new_labels = [] if labels is not None else None cur_image_idx = 0 for batch_idx, cur_input_ids in enumerate(input_ids): if (cur_input_ids == IMAGE_TOKEN_INDEX).sum() == 0: # multimodal LLM, but the current sample is not multimodal # FIXME: this is a hacky fix, for deepspeed zero3 to work half_len = cur_input_ids.shape[0] // 2 cur_image_features = image_features[cur_image_idx] cur_input_embeds_1 = self.get_model().embed_tokens(cur_input_ids[:half_len]) cur_input_embeds_2 = self.get_model().embed_tokens(cur_input_ids[half_len:]) cur_input_embeds = torch.cat([cur_input_embeds_1, cur_image_features[0:0], cur_input_embeds_2], dim=0) new_input_embeds.append(cur_input_embeds) if labels is not None: new_labels.append(labels[batch_idx]) cur_image_idx += 1 continue image_token_indices = torch.where(cur_input_ids == IMAGE_TOKEN_INDEX)[0] cur_new_input_embeds = [] if labels is not None: cur_labels = labels[batch_idx] cur_new_labels = [] assert cur_labels.shape == cur_input_ids.shape while image_token_indices.numel() > 0: cur_image_features = image_features[cur_image_idx] image_token_start = image_token_indices[0] if getattr(self.config, 'tune_mm_mlp_adapter', False) and getattr(self.config, 'mm_use_im_start_end', False): cur_new_input_embeds.append(self.get_model().embed_tokens(cur_input_ids[:image_token_start-1]).detach()) cur_new_input_embeds.append(self.get_model().embed_tokens(cur_input_ids[image_token_start-1:image_token_start])) cur_new_input_embeds.append(cur_image_features) cur_new_input_embeds.append(self.get_model().embed_tokens(cur_input_ids[image_token_start+1:image_token_start+2])) if labels is not None: cur_new_labels.append(cur_labels[:image_token_start]) cur_new_labels.append(torch.full((cur_image_features.shape[0],), IGNORE_INDEX, device=labels.device, dtype=labels.dtype)) cur_new_labels.append(cur_labels[image_token_start:image_token_start+1]) cur_labels = cur_labels[image_token_start+2:] else: cur_new_input_embeds.append(self.get_model().embed_tokens(cur_input_ids[:image_token_start])) cur_new_input_embeds.append(cur_image_features) if labels is not None: cur_new_labels.append(cur_labels[:image_token_start]) cur_new_labels.append(torch.full((cur_image_features.shape[0],), IGNORE_INDEX, device=labels.device, dtype=labels.dtype)) cur_labels = cur_labels[image_token_start+1:] cur_image_idx += 1 if getattr(self.config, 'tune_mm_mlp_adapter', False) and getattr(self.config, 'mm_use_im_start_end', False): cur_input_ids = cur_input_ids[image_token_start+2:] else: cur_input_ids = cur_input_ids[image_token_start+1:] image_token_indices = torch.where(cur_input_ids == IMAGE_TOKEN_INDEX)[0] if cur_input_ids.numel() > 0: if getattr(self.config, 'tune_mm_mlp_adapter', False) and getattr(self.config, 'mm_use_im_start_end', False): cur_new_input_embeds.append(self.get_model().embed_tokens(cur_input_ids).detach()) else: cur_new_input_embeds.append(self.get_model().embed_tokens(cur_input_ids)) if labels is not None: cur_new_labels.append(cur_labels) cur_new_input_embeds = [x.to(device=self.device) for x in cur_new_input_embeds] cur_new_input_embeds = torch.cat(cur_new_input_embeds, dim=0) new_input_embeds.append(cur_new_input_embeds) if labels is not None: cur_new_labels = torch.cat(cur_new_labels, dim=0) new_labels.append(cur_new_labels) if any(x.shape != new_input_embeds[0].shape for x in new_input_embeds): max_len = max(x.shape[0] for x in new_input_embeds) new_input_embeds_align = [] for cur_new_embed in new_input_embeds: cur_new_embed = torch.cat((cur_new_embed, torch.zeros((max_len - cur_new_embed.shape[0], cur_new_embed.shape[1]), dtype=cur_new_embed.dtype, device=cur_new_embed.device)), dim=0) new_input_embeds_align.append(cur_new_embed) new_input_embeds = torch.stack(new_input_embeds_align, dim=0) if labels is not None: new_labels_align = [] _new_labels = new_labels for cur_new_label in new_labels: cur_new_label = torch.cat((cur_new_label, torch.full((max_len - cur_new_label.shape[0],), IGNORE_INDEX, dtype=cur_new_label.dtype, device=cur_new_label.device)), dim=0) new_labels_align.append(cur_new_label) new_labels = torch.stack(new_labels_align, dim=0) if attention_mask is not None: new_attention_mask = [] for cur_attention_mask, cur_new_labels, cur_new_labels_align in zip(attention_mask, _new_labels, new_labels): new_attn_mask_pad_left = torch.full((cur_new_labels.shape[0] - labels.shape[1],), True, dtype=attention_mask.dtype, device=attention_mask.device) new_attn_mask_pad_right = torch.full((cur_new_labels_align.shape[0] - cur_new_labels.shape[0],), False, dtype=attention_mask.dtype, device=attention_mask.device) cur_new_attention_mask = torch.cat((new_attn_mask_pad_left, cur_attention_mask, new_attn_mask_pad_right), dim=0) new_attention_mask.append(cur_new_attention_mask) attention_mask = torch.stack(new_attention_mask, dim=0) assert attention_mask.shape == new_labels.shape else: new_input_embeds = torch.stack(new_input_embeds, dim=0) if labels is not None: new_labels = torch.stack(new_labels, dim=0) if attention_mask is not None: new_attn_mask_pad_left = torch.full((attention_mask.shape[0], new_input_embeds.shape[1] - input_ids.shape[1]), True, dtype=attention_mask.dtype, device=attention_mask.device) attention_mask = torch.cat((new_attn_mask_pad_left, attention_mask), dim=1) assert attention_mask.shape == new_input_embeds.shape[:2] return None, attention_mask, past_key_values, new_input_embeds, new_labels class QH360_VLConfig(LlamaConfig): model_type = "QH_360VL" class QH360_VL_LlamaModel(QH360_VL_MetaModel, LlamaModel): config_class = QH360_VLConfig def __init__(self, config: LlamaConfig): super(QH360_VL_LlamaModel, self).__init__(config) class QH360_VL_LlamaForCausalLM(LlamaForCausalLM, QH360_VL_MetaForCausalLM): config_class = QH360_VLConfig def __init__(self, config): super(LlamaForCausalLM, self).__init__(config) config._attn_implementation == "flash_attention_2" self.model = QH360_VL_LlamaModel(config) self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=False) # Initialize weights and apply final processing self.post_init() def get_model(self): return self.model def forward( self, input_ids: torch.LongTensor = None, attention_mask: Optional[torch.Tensor] = None, past_key_values: Optional[List[torch.FloatTensor]] = None, inputs_embeds: Optional[torch.FloatTensor] = None, labels: Optional[torch.LongTensor] = None, use_cache: Optional[bool] = None, output_attentions: Optional[bool] = None, output_hidden_states: Optional[bool] = None, images: Optional[torch.FloatTensor] = None, return_dict: Optional[bool] = None, ) -> Union[Tuple, CausalLMOutputWithPast]: output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions output_hidden_states = ( output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states ) return_dict = return_dict if return_dict is not None else self.config.use_return_dict input_ids, attention_mask, past_key_values, inputs_embeds, labels = self.prepare_inputs_labels_for_multimodal(input_ids, attention_mask, past_key_values, labels, images) # decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn) outputs = self.model( input_ids=input_ids, attention_mask=attention_mask, past_key_values=past_key_values, inputs_embeds=inputs_embeds, use_cache=use_cache, output_attentions=output_attentions, output_hidden_states=output_hidden_states, return_dict=return_dict ) hidden_states = outputs[0] logits = self.lm_head(hidden_states) loss = None if labels is not None: # Shift so that tokens < n predict n shift_logits = logits[..., :-1, :].contiguous() shift_labels = labels[..., 1:].contiguous() # Flatten the tokens loss_fct = CrossEntropyLoss() shift_logits = shift_logits.view(-1, self.config.vocab_size) shift_labels = shift_labels.view(-1) # Enable model/pipeline parallelism shift_labels = shift_labels.to(shift_logits.device) loss = loss_fct(shift_logits, shift_labels) if not return_dict: output = (logits,) + outputs[1:] return (loss,) + output if loss is not None else output return CausalLMOutputWithPast( loss=loss, logits=logits, past_key_values=outputs.past_key_values, hidden_states=outputs.hidden_states, attentions=outputs.attentions, ) def prepare_inputs_for_generation( self, input_ids, past_key_values=None, attention_mask=None, inputs_embeds=None, **kwargs ): if past_key_values: input_ids = input_ids[:, -1:] # if `inputs_embeds` are passed, we only want to use them in the 1st generation step if inputs_embeds is not None and past_key_values is None: model_inputs = {"inputs_embeds": inputs_embeds} else: model_inputs = {"input_ids": input_ids} model_inputs.update( { "past_key_values": past_key_values, "use_cache": kwargs.get("use_cache"), "attention_mask": attention_mask, "images": kwargs.get("images", None), } ) return model_inputs def build_conversation_input_ids( self, tokenizer: "PreTrainedTokenizer", query: str, image = None, image_processor=None, ): """ sysp = ( 'You are an expert identifying and clasifying information as Protected Health Information (PHI) based on the following criteria: ' 'Inferred PHI encompasses information about a specific disease/condition/medical diagnosis, in the context ' 'that the information MUST directly identify the specific disease/condition/medical diagnosis and MUST provide ' 'treatments/services/specific information about the specific disease/condition/medical diagnosis; you MUST identify an actual disease/condition/diagnosis in the information to be considered PHI. ' 'EXAMPLE: A search page for providers treating a single specific condition/diagnosis, such as colon cancer, would be PHI EXCEPT as outlined as in "EXCEPTIONS" as follows. ' 'EXAMPLE: A page, directly containing detailed information about a single specific condition/treatment/diagnosis, such as a unique treatment for colon cancer, ' 'would be be PHI, EXCEPT as outlined as in "EXCEPTIONS" as follows. ' 'EXAMPLE: A patient login portal for a speciality medical provider would be PHI. ' 'EXCEPTIONS: General medical information, such as a list of hospital or medical provider services offered, ' 'without specific conditions/diagnoses detailed is NOT PHI. ' 'EXCEPTIONS: Information about individuals, including images of individuals and those appearing to be in the ' 'medical profession, without details of their (or a) specific medical conditions is NOT PHI. ' 'EXCEPTIONS: News articles about specific medical conditions is NOT PHI. ' 'EXCEPTIONS: General service listings, like emergency medical services, transportation services, etc. are NOT PHI. ' 'EXCEPTIONS: Information about common diseases/conditions/diagnosis, such as the seasonal flu, common cold, covid, aging, etc. is NOT PHI. ' 'EXCEPTIONS: Finding words or phrases associated with medical services including medical professions, without a SPECIFIC medical condition, diagnosis or treatment included, is NOT PHI. ' 'EXCEPTIONS: Job postings are NOT PHI. Blog articles are NOT PHI. News articles are NOT PHI. Media postings are NOT PHI. ' 'EXCEPTIONS: Information about a specific individual or individuals, contained in a news article, blog posting or media posting, is NOT PHI. ' 'EXCEPTIONS: Posters and/or event announcments about medical conditions and/or events related to medical conditions, for example a benefit for breast cancer survivors, is NOT PHI. ' 'EXCEPTION EXAMPLE: An image of a women wearing doctor clothes without the identification of a specific medical condition would NOT BE PHI' 'Typically you would have identified NO applicable EXCEPTIONS in order to affirmatively answer "Yes" to a question such as "Can you infer PHI from this page?". ' 'EXCEPTIONS override potential identification of PHI; if you are unable to definitively determine the presence of PHI based information in the image, then you DID NOT identify PHI and your determination/response should begin with "No". ' 'When providing your response it MUST start with "Yes" or "No" based on your review of the image, followed by a brief summary explanation of the rationale for the "Yes" or "No" decision including the information you found supporting that rational; ' 'you MUST INCLUDE a brief summary explanation of the rationale for the "Yes" or "No" decision including the information you found supporting that rational.' '' ) """ sysp = ( 'You are an expert identifying and clasifying information as Protected Health Information (PHI) based on the following criteria: ' 'Inferred PHI encompasses information about a specific disease/condition/medical diagnosis, in the context ' 'that the information MUST directly identify the specific disease/condition/medical diagnosis and MUST provide ' 'treatments/services/specific information about the specific disease/condition/medical diagnosis; you MUST identify an actual disease/condition/diagnosis in the information to be considered PHI. ' 'If you are unable to definitively determine the presence of PHI based information in the image, then you DID NOT identify PHI and your determination/response should begin with "No". ' 'When providing your response it MUST start with "Yes" or "No" based on your review of the image, followed by a brief summary explanation of the rationale for the "Yes" or "No" decision including the information you found supporting that rational; ' 'you MUST INCLUDE a brief summary explanation of the rationale for the "Yes" or "No" decision including the information you found supporting that rational.' ) input_msg = [ { "role": "system", "content": sysp }, { "role": "user", "content": "<|reserved_special_token_44|>"+ '\n' + query } ] input_ids = tokenizer.apply_chat_template( input_msg, add_generation_prompt=True, padding="longest", return_tensors="pt", ) input_id_list = input_ids[0].tolist() input_id_list[input_id_list.index(128049)]=-200 input_ids = torch.tensor(input_id_list, dtype=input_ids.dtype,device=input_ids.device) input_ids = input_ids.unsqueeze(0) image_tensor = self.process_images_slid_window(image,image_processor).unsqueeze(0) return { 'input_ids': input_ids, 'image': image_tensor, } def process_images_slid_window(self, image, image_processor, vit_is=336): def get_proper_imgsize(pil_img, vit_is): max_w_h = vit_is * 2 new_pil_img = pil_img.resize((max_w_h, max_w_h)) return new_pil_img def tensor_crop(tensor_array, left, upper, right, lower): # tensor_array: C * H * W return tensor_array[:, upper:lower, left:right] def image_slid_window(image, num_slid_window): # image: tensor, 3 * 336 * 336 or 3 * 672 * 672 # image: tensor, 3 * 224 * 224 or 3 * 448 * 448 if num_slid_window == 5: image_x2, image_x1 = image[0], image[1] vit_is = image_x1.shape[1] h, w = image_x2.shape[1],image_x2.shape[2] image0 = tensor_crop(image_x2, 0, 0, vit_is, vit_is) image1 = tensor_crop(image_x2, w-vit_is, 0, w, vit_is) image2 = tensor_crop(image_x2, 0, h-vit_is, vit_is, h) image3 = tensor_crop(image_x2, w-vit_is, h-vit_is, w, h) return torch.stack([image0, image1, image2, image3, image_x1]) else: return image def expand2square(pil_img, background_color): width, height = pil_img.size if width == height: return pil_img elif width > height: result = Image.new(pil_img.mode, (width, width), background_color) result.paste(pil_img, (0, (width - height) // 2)) return result else: result = Image.new(pil_img.mode, (height, height), background_color) result.paste(pil_img, ((height - width) // 2, 0)) return result vit_is = vit_is # vit_input_size, for simplicity num_slid_window = 5 image = expand2square(image, tuple(int(x*255) for x in image_processor.image_mean)) image = get_proper_imgsize(image, vit_is) image_x2 = image_processor.preprocess(image, return_tensors='pt', do_resize=False, do_center_crop=False)['pixel_values'][0] image_x1 = image_processor.preprocess(image, return_tensors='pt')['pixel_values'][0] image = [image_x2, image_x1] image = image_slid_window(image, num_slid_window) return image