run_summarization_flax.py

#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for summarization.
"""
# You can also adapt this script on your own sequence to sequence task. Pointers for this are left as comments.

import logging
import os
import sys
import time
from dataclasses import dataclass, field
from functools import partial
from pathlib import Path
from typing import Callable, Optional

import datasets
import nltk  # Here to have a nice missing dependency error message early on
import numpy as np
from datasets import Dataset, load_dataset, load_metric
from tqdm import tqdm
from PIL import Image

import jax
import jax.numpy as jnp
import optax
import transformers
from filelock import FileLock
from flax import jax_utils, traverse_util
from flax.jax_utils import unreplicate
from flax.training import train_state
from flax.training.common_utils import get_metrics, onehot, shard, shard_prng_key
from huggingface_hub import Repository
from transformers import (
    CONFIG_MAPPING,
    FLAX_MODEL_FOR_VISION_2_SEQ_MAPPING,
    AutoConfig,
    AutoFeatureExtractor,
    AutoTokenizer,
    FlaxAutoModelForSeq2SeqLM,
    HfArgumentParser,
    TrainingArguments,
    is_tensorboard_available,
    FlaxAutoModelForVision2Seq,    
)
from transformers.file_utils import get_full_repo_name, is_offline_mode


logger = logging.getLogger(__name__)

try:
    nltk.data.find("tokenizers/punkt")
except (LookupError, OSError):
    if is_offline_mode():
        raise LookupError(
            "Offline mode: run this script without TRANSFORMERS_OFFLINE first to download nltk data files"
        )
    with FileLock(".lock") as lock:
        nltk.download("punkt", quiet=True)


MODEL_CONFIG_CLASSES = list(FLAX_MODEL_FOR_VISION_2_SEQ_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)


# Copied from transformers.models.bart.modeling_flax_bart.shift_tokens_right
def shift_tokens_right(input_ids: jnp.ndarray, pad_token_id: int, decoder_start_token_id: int) -> jnp.ndarray:
    """
    Shift input ids one token to the right.
    """
    shifted_input_ids = np.zeros_like(input_ids)
    shifted_input_ids[:, 1:] = input_ids[:, :-1]
    shifted_input_ids[:, 0] = decoder_start_token_id

    shifted_input_ids = np.where(shifted_input_ids == -100, pad_token_id, shifted_input_ids)
    return shifted_input_ids


@dataclass
class ModelArguments:
    """
    Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
    """

    model_name_or_path: Optional[str] = field(
        default=None,
        metadata={
            "help": "The model checkpoint for weights initialization."
            "Don't set if you want to train a model from scratch."
        },
    )
    encoder_model_name_or_path: Optional[str] = field(
        default=None,
        metadata={
            "help": "The encoder model checkpoint for weights initialization."
            "Don't set if you want to train a model from scratch."
        },
    )
    decoder_model_name_or_path: Optional[str] = field(
        default=None,
        metadata={
            "help": "The decoder model checkpoint for weights initialization."
            "Don't set if you want to train a model from scratch."
        },
    )
    model_type: Optional[str] = field(
        default=None,
        metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
    )
    encoder_model_type: Optional[str] = field(
        default=None,
        metadata={"help": "If training from scratch, pass a encoder model type from the list: " + ", ".join(MODEL_TYPES)},
    )
    decoder_model_type: Optional[str] = field(
        default=None,
        metadata={"help": "If training from scratch, pass a decoder model type from the list: " + ", ".join(MODEL_TYPES)},
    )
    config_name: Optional[str] = field(
        default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
    )
    encoder_config_name: Optional[str] = field(
        default=None, metadata={"help": "Pretrained config name or path if not the same as encoder_model_name"}
    )
    decoder_config_name: Optional[str] = field(
        default=None, metadata={"help": "Pretrained config name or path if not the same as decoder_model_name"}
    )
    feature_extractor_name: Optional[str] = field(
        default=None, metadata={"help": "Pretrained feature extractor_name name or path if not the same as encoder_model_name"}
    )
    tokenizer_name: Optional[str] = field(
        default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as decoder_model_name"}
    )
    cache_dir: Optional[str] = field(
        default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
    )
    use_fast_tokenizer: bool = field(
        default=True,
        metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
    )
    dtype: Optional[str] = field(
        default="float32",
        metadata={
            "help": "Floating-point format in which the model weights should be initialized and trained. Choose one of `[float32, float16, bfloat16]`."
        },
    )


@dataclass
class DataTrainingArguments:
    """
    Arguments pertaining to what data we are going to input our model for training and eval.
    """

    dataset_name: Optional[str] = field(
        default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
    )
    dataset_config_name: Optional[str] = field(
        default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
    )
    data_dir: Optional[str] = field(
        default=None, metadata={"help": "The data directory of the dataset to use (via the datasets library)."}
    )
    image_column: Optional[str] = field(
        default=None,
        metadata={"help": "The name of the column in the datasets containing the full image file paths (for image captioning)."},
    )
    caption_column: Optional[str] = field(
        default=None,
        metadata={"help": "The name of the column in the datasets containing the image captions (for image captioning)."},
    )
    train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
    validation_file: Optional[str] = field(
        default=None,
        metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
    )
    test_file: Optional[str] = field(
        default=None,
        metadata={"help": "An optional input predict data file to do prediction on (a text file)."},
    )
    max_source_length: Optional[int] = field(
        default=1024,
        metadata={
            "help": "The maximum total input sequence length after tokenization. Sequences longer "
            "than this will be truncated, sequences shorter will be padded."
        },
    )
    max_target_length: Optional[int] = field(
        default=128,
        metadata={
            "help": "The maximum total sequence length for target text after tokenization. Sequences longer "
            "than this will be truncated, sequences shorter will be padded."
        },
    )
    val_max_target_length: Optional[int] = field(
        default=None,
        metadata={
            "help": "The maximum total sequence length for validation target text after tokenization. Sequences longer "
            "than this will be truncated, sequences shorter will be padded. Will default to `max_target_length`."
            "This argument is also used to override the `max_length` param of `model.generate`, which is used "
            "during evaluation."
        },
    )
    max_train_samples: Optional[int] = field(
        default=None,
        metadata={
            "help": "For debugging purposes or quicker training, truncate the number of training examples to this "
            "value if set."
        },
    )
    max_eval_samples: Optional[int] = field(
        default=None,
        metadata={
            "help": "For debugging purposes or quicker training, truncate the number of evaluation examples to this "
            "value if set."
        },
    )
    max_predict_samples: Optional[int] = field(
        default=None,
        metadata={
            "help": "For debugging purposes or quicker training, truncate the number of prediction examples to this "
            "value if set."
        },
    )
    preprocessing_num_workers: Optional[int] = field(
        default=None,
        metadata={"help": "The number of processes to use for the preprocessing."},
    )
    predict_with_generate: bool = field(
        default=False, metadata={"help": "Whether to use generate to calculate generative metrics (ROUGE, BLEU)."}
    )
    num_beams: Optional[int] = field(
        default=None,
        metadata={
            "help": "Number of beams to use for evaluation. This argument will be passed to `model.generate`, "
            "which is used during evaluation."
        },
    )
    overwrite_cache: bool = field(
        default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
    )

    def __post_init__(self):
        if self.dataset_name is None and self.train_file is None and self.validation_file is None:
            raise ValueError("Need either a dataset name or a training/validation file.")
        else:
            if self.train_file is not None:
                extension = self.train_file.split(".")[-1]
                assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
            if self.validation_file is not None:
                extension = self.validation_file.split(".")[-1]
                assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
        if self.val_max_target_length is None:
            self.val_max_target_length = self.max_target_length


image_captioning_name_mapping = {
    "image_caption_dataset.py": ("image_file", "caption"),
}


class TrainState(train_state.TrainState):
    dropout_rng: jnp.ndarray

    def replicate(self):
        return jax_utils.replicate(self).replace(dropout_rng=shard_prng_key(self.dropout_rng))


def data_loader(rng: jax.random.PRNGKey, dataset: Dataset, batch_size: int, shuffle: bool = False):
    """
    Returns batches of size `batch_size` from truncated `dataset`, sharded over all local devices.
    Shuffle batches if `shuffle` is `True`.
    """
    steps_per_epoch = len(dataset) // batch_size

    if shuffle:
        batch_idx = jax.random.permutation(rng, len(dataset))
    else:
        batch_idx = jnp.arange(len(dataset))

    batch_idx = batch_idx[: steps_per_epoch * batch_size]  # Skip incomplete batch.
    batch_idx = batch_idx.reshape((steps_per_epoch, batch_size))

    for idx in batch_idx:
        batch = dataset[idx]
        batch = {k: jnp.array(v) for k, v in batch.items()}

        batch = shard(batch)

        yield batch


def write_metric(summary_writer, train_metrics, eval_metrics, train_time, step):
    summary_writer.scalar("train_time", train_time, step)

    train_metrics = get_metrics(train_metrics)
    for key, vals in train_metrics.items():
        tag = f"train_{key}"
        for i, val in enumerate(vals):
            summary_writer.scalar(tag, val, step - len(vals) + i + 1)

    for metric_name, value in eval_metrics.items():
        summary_writer.scalar(f"eval_{metric_name}", value, step)


def create_learning_rate_fn(
    train_ds_size: int, train_batch_size: int, num_train_epochs: int, num_warmup_steps: int, learning_rate: float
) -> Callable[[int], jnp.array]:
    """Returns a linear warmup, linear_decay learning rate function."""
    steps_per_epoch = train_ds_size // train_batch_size
    num_train_steps = steps_per_epoch * num_train_epochs
    warmup_fn = optax.linear_schedule(init_value=0.0, end_value=learning_rate, transition_steps=num_warmup_steps)
    decay_fn = optax.linear_schedule(
        init_value=learning_rate, end_value=0, transition_steps=num_train_steps - num_warmup_steps
    )
    schedule_fn = optax.join_schedules(schedules=[warmup_fn, decay_fn], boundaries=[num_warmup_steps])
    return schedule_fn


def main():
    # See all possible arguments in src/transformers/training_args.py
    # or by passing the --help flag to this script.
    # We now keep distinct sets of args, for a cleaner separation of concerns.

    parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
    if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
        # If we pass only one argument to the script and it's the path to a json file,
        # let's parse it to get our arguments.
        model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
    else:
        model_args, data_args, training_args = parser.parse_args_into_dataclasses()

    if (
        os.path.exists(training_args.output_dir)
        and os.listdir(training_args.output_dir)
        and training_args.do_train
        and not training_args.overwrite_output_dir
    ):
        raise ValueError(
            f"Output directory ({training_args.output_dir}) already exists and is not empty."
            "Use --overwrite_output_dir to overcome."
        )

    # Make one log on every process with the configuration for debugging.
    logging.basicConfig(
        format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
        datefmt="%m/%d/%Y %H:%M:%S",
        level=logging.INFO,
    )
    # Setup logging, we only want one process per machine to log things on the screen.
    logger.setLevel(logging.INFO if jax.process_index() == 0 else logging.ERROR)
    if jax.process_index() == 0:
        datasets.utils.logging.set_verbosity_warning()
        transformers.utils.logging.set_verbosity_info()
    else:
        datasets.utils.logging.set_verbosity_error()
        transformers.utils.logging.set_verbosity_error()

    # Set the verbosity to info of the Transformers logger (on main process only):
    logger.info(f"Training/evaluation parameters {training_args}")

    # Handle the repository creation
    if training_args.push_to_hub:
        if training_args.hub_model_id is None:
            repo_name = get_full_repo_name(
                Path(training_args.output_dir).absolute().name, token=training_args.hub_token
            )
        else:
            repo_name = training_args.hub_model_id
        repo = Repository(training_args.output_dir, clone_from=repo_name)

    # Get the datasets: you can either provide your own CSV/JSON training and evaluation files (see below)
    # or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
    # (the dataset will be downloaded automatically from the datasets Hub).
    #
    # For CSV/JSON files this script will use the first column for the full texts and the second column for the
    # summaries (unless you specify column names for this with the `text_column` and `summary_column` arguments).
    #
    if data_args.dataset_name is not None:
        # Downloading and loading a dataset from the hub.
        dataset = load_dataset(
            data_args.dataset_name, data_args.dataset_config_name, cache_dir=model_args.cache_dir, keep_in_memory=False, data_dir=data_args.data_dir
        )
    else:
        data_files = {}
        if data_args.train_file is not None:
            data_files["train"] = data_args.train_file
            extension = data_args.train_file.split(".")[-1]
        if data_args.validation_file is not None:
            data_files["validation"] = data_args.validation_file
            extension = data_args.validation_file.split(".")[-1]
        if data_args.test_file is not None:
            data_files["test"] = data_args.test_file
            extension = data_args.test_file.split(".")[-1]
        # TODO: Check
        dataset = load_dataset(extension, data_files=data_files, cache_dir=model_args.cache_dir, data_dir=data_args.data_dir)
    # See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
    # https://huggingface.co/docs/datasets/loading_datasets.html.

    # Load pretrained model and tokenizer

    encoder_cache_dir, decoder_cache_dir = None, None
    if model_args.cache_dir:
        encoder_cache_dir = os.path.join(model_args.cache_dir, "encoder")
        decoder_cache_dir = os.path.join(model_args.cache_dir, "decoder")

    if model_args.config_name:
        config = AutoConfig.from_pretrained(model_args.config_name, cache_dir=model_args.cache_dir)
    elif model_args.model_name_or_path:
        config = AutoConfig.from_pretrained(model_args.model_name_or_path, cache_dir=model_args.cache_dir)
    elif getattr(CONFIG_MAPPING[model_args.model_type], "from_encoder_decoder_configs", None):

        config_class = CONFIG_MAPPING[model_args.model_type]
    
        if model_args.encoder_config_name:
            encoder_config = AutoConfig.from_pretrained(model_args.encoder_config_name, cache_dir=encoder_cache_dir)
        elif model_args.encoder_model_name_or_path:
            encoder_config = AutoConfig.from_pretrained(model_args.encoder_model_name_or_path, cache_dir=encoder_cache_dir)
        else:
            encoder_config = CONFIG_MAPPING[model_args.encoder_model_type]()
            logger.warning("You are instantiating a new config instance from scratch for the encoder.")

        if model_args.decoder_config_name:
            decoder_config = AutoConfig.from_pretrained(model_args.decoder_config_name, cache_dir=decoder_cache_dir)
        elif model_args.decoder_model_name_or_path:
            decoder_config = AutoConfig.from_pretrained(model_args.decoder_model_name_or_path, cache_dir=decoder_cache_dir)
        else:
            decoder_config = CONFIG_MAPPING[model_args.decoder_model_type]()
            logger.warning("You are instantiating a new config instance from scratch for the decoder.")

        logger.info("Setting `config.is_decoder=True` and `config.add_cross_attention=True` for decoder_config")
        decoder_config.is_decoder = True
        decoder_config.add_cross_attention = True

        config = config_class.from_encoder_decoder_configs(encoder_config, decoder_config)
    else:
        config = CONFIG_MAPPING[model_args.model_type]()
        logger.warning("You are instantiating a new config instance from scratch.")

    decoder_start_token_id = getattr(config, "decoder_start_token_id", None)
    if not decoder_start_token_id and getattr(config, "decoder", None):
        decoder_start_token_id = getattr(config.decoder, "decoder_start_token_id", None)
    bos_token_id = getattr(config, "bos_token_id", None)
    if not bos_token_id and getattr(config, "decoder", None):
        bos_token_id = getattr(config.decoder, "bos_token_id", None)
    eos_token_id = getattr(config, "eos_token_id", None)
    if not eos_token_id and getattr(config, "decoder", None):
        eos_token_id = getattr(config.decoder, "eos_token_id", None)
    pad_token_id = getattr(config, "pad_token_id", None)
    if not pad_token_id and getattr(config, "decoder", None):
        pad_token_id = getattr(config.decoder, "pad_token_id", None)

    if decoder_start_token_id is None:
        decoder_start_token_id = bos_token_id
    if pad_token_id is None:
        pad_token_id = eos_token_id
            
    config.decoder_start_token_id = decoder_start_token_id
    config.bos_token_id = bos_token_id
    config.eos_token_id = eos_token_id
    config.pad_token_id = pad_token_id

    if getattr(config, "decoder", None):
        config.decoder.decoder_start_token_id = decoder_start_token_id           
        config.decoder.bos_token_id = bos_token_id
        config.decoder.eos_token_id = eos_token_id
        config.decoder.pad_token_id = pad_token_id

    feature_extractor = None
    if model_args.feature_extractor_name:
        feature_extractor = AutoFeatureExtractor.from_pretrained(
            model_args.feature_extractor_name, cache_dir=model_args.cache_dir,
        )
    elif model_args.model_name_or_path:
        try:
            feature_extractor = AutoFeatureExtractor.from_pretrained(
                model_args.model_name_or_path, cache_dir=model_args.cache_dir
            )
        except ValueError as e:
            logger.warning(e)
    if not feature_extractor:
        if model_args.encoder_model_name_or_path:
            feature_extractor = AutoFeatureExtractor.from_pretrained(
                model_args.encoder_model_name_or_path, cache_dir=model_args.cache_dir
            )
        else:
            raise ValueError(
                "You are instantiating a new feature extractor from scratch. This is not supported by this script."
                "You can do it from another script, save it, and load it from here, using --feature_extractor_name."
            )

    tokenizer = None
    if model_args.tokenizer_name:
        tokenizer = AutoTokenizer.from_pretrained(
            model_args.tokenizer_name, cache_dir=model_args.cache_dir, use_fast=model_args.use_fast_tokenizer
        )
    elif model_args.model_name_or_path:
        try:
            tokenizer = AutoTokenizer.from_pretrained(
                model_args.model_name_or_path, cache_dir=model_args.cache_dir, use_fast=model_args.use_fast_tokenizer
            )
        except ValueError as e:
            logger.warning(e)
    if not tokenizer:
        if model_args.decoder_model_name_or_path:
            tokenizer = AutoTokenizer.from_pretrained(
                model_args.decoder_model_name_or_path, cache_dir=model_args.cache_dir, use_fast=model_args.use_fast_tokenizer
            )
        else:
            raise ValueError(
                "You are instantiating a new tokenizer from scratch. This is not supported by this script."
                "You can do it from another script, save it, and load it from here, using --tokenizer_name."
            )
    tokenizer.pad_token = tokenizer.convert_ids_to_tokens(config.pad_token_id)

    if model_args.model_name_or_path:
        model = FlaxAutoModelForVision2Seq.from_pretrained(
            model_args.model_name_or_path, config=config, seed=training_args.seed, dtype=getattr(jnp, model_args.dtype)
        )
    elif model_args.encoder_model_name_or_path and model_args.decoder_model_name_or_path:
        model_class = FlaxAutoModelForVision2Seq.from_config(config).__class__
        model = model_class.from_encoder_decoder_pretrained(
            model_args.encoder_model_name_or_path,
            model_args.decoder_model_name_or_path,
            encoder_config=config.encoder,
            decoder_config=config.decoder,
            encoder_seed=training_args.seed,
            decoder_seed=training_args.seed,
            encoder_dtype=getattr(jnp, model_args.dtype),
            decoder_dtype=getattr(jnp, model_args.dtype),
        )
        # Set `encoder-decoder` (top-level) specific config
        model.config.decoder_start_token_id = decoder_start_token_id
        model.config.bos_token_id = bos_token_id
        model.config.eos_token_id = eos_token_id
        model.config.pad_token_id = pad_token_id
    else:
        model = FlaxAutoModelForVision2Seq.from_config(
            config, seed=training_args.seed, dtype=getattr(jnp, model_args.dtype)
        )

    # Preprocessing the datasets.
    # We need to tokenize inputs and targets.
    if training_args.do_train:
        column_names = dataset["train"].column_names
    elif training_args.do_eval:
        column_names = dataset["validation"].column_names
    elif training_args.do_predict:
        column_names = dataset["test"].column_names
    else:
        logger.info("There is nothing to do. Please pass `do_train`, `do_eval` and/or `do_predict`.")
        return

    # Get the column names for input/target.
    dataset_columns = image_captioning_name_mapping.get(data_args.dataset_name, None)
    if data_args.image_column is None:
        assert dataset_columns is not None
        image_column = dataset_columns[0]
    else:
        image_column = data_args.image_column
        if image_column not in column_names:
            raise ValueError(
                f"--image_column' value '{data_args.image_column}' needs to be one of: {', '.join(column_names)}"
            )
    if data_args.caption_column is None:
        assert dataset_columns is not None
        caption_column = dataset_columns[1]
    else:
        caption_column = data_args.caption_column
        if caption_column not in column_names:
            raise ValueError(
                f"--caption_column' value '{data_args.caption_column}' needs to be one of: {', '.join(column_names)}"
            )

    # Temporarily set max_target_length for training.
    max_target_length = data_args.max_target_length

    # In Flax, for seq2seq models we need to pass `decoder_input_ids`
    # as the Flax models don't accept `labels`, we need to prepare the decoder_input_ids here
    # for that dynamically import the `shift_tokens_right` function from the model file
    model_module = __import__(model.__module__, fromlist=["shift_tokens_right"])
    shift_tokens_right_fn = getattr(model_module, "shift_tokens_right", shift_tokens_right)

    # Setting padding="max_length" as we need fixed length inputs for jitted functions
    def preprocess_function(examples):
    
        pixel_values = []
        captions = []
        for image_file, caption in zip(examples[image_column], examples[caption_column]):
            with Image.open(image_file) as image:
                try:
                    encoder_inputs = feature_extractor(images=image, return_tensors="np")
                except:
                    continue
                pixel_values.append(encoder_inputs.pixel_values)
                captions.append(caption + ' ' + tokenizer.eos_token)

        pixel_values = np.concatenate(pixel_values)
        targets = captions

        model_inputs = {}
        model_inputs['pixel_values'] = pixel_values

        # Setup the tokenizer for targets
        with tokenizer.as_target_tokenizer():
            labels = tokenizer(
                targets, max_length=max_target_length, padding="max_length", truncation=True, return_tensors="np"
            )

        model_inputs["labels"] = labels["input_ids"]
        decoder_input_ids = shift_tokens_right_fn(
            jnp.array(labels["input_ids"]), config.pad_token_id, config.decoder_start_token_id
        )
        model_inputs["decoder_input_ids"] = np.asarray(decoder_input_ids)

        # We need decoder_attention_mask so we can ignore pad tokens from loss
        model_inputs["decoder_attention_mask"] = labels["attention_mask"]

        return model_inputs

    if training_args.do_train:
        if "train" not in dataset:
            raise ValueError("--do_train requires a train dataset")
        train_dataset = dataset["train"]
        if data_args.max_train_samples is not None:
            train_dataset = train_dataset.select(range(data_args.max_train_samples))
        train_dataset = train_dataset.map(
            preprocess_function,
            batched=True,
            num_proc=data_args.preprocessing_num_workers,
            remove_columns=column_names,
            load_from_cache_file=not data_args.overwrite_cache,
            desc="Running tokenizer on train dataset",
        )

    if training_args.do_eval:
        max_target_length = data_args.val_max_target_length
        if "validation" not in dataset:
            raise ValueError("--do_eval requires a validation dataset")
        eval_dataset = dataset["validation"]
        if data_args.max_eval_samples is not None:
            eval_dataset = eval_dataset.select(range(data_args.max_eval_samples))
        eval_dataset = eval_dataset.map(
            preprocess_function,
            batched=True,
            num_proc=data_args.preprocessing_num_workers,
            remove_columns=column_names,
            load_from_cache_file=not data_args.overwrite_cache,
            desc="Running tokenizer on validation dataset",
        )

    if training_args.do_predict:
        max_target_length = data_args.val_max_target_length
        if "test" not in dataset:
            raise ValueError("--do_predict requires a test dataset")
        predict_dataset = dataset["test"]
        if data_args.max_predict_samples is not None:
            predict_dataset = predict_dataset.select(range(data_args.max_predict_samples))
        predict_dataset = predict_dataset.map(
            preprocess_function,
            batched=True,
            num_proc=data_args.preprocessing_num_workers,
            remove_columns=column_names,
            load_from_cache_file=not data_args.overwrite_cache,
            desc="Running tokenizer on prediction dataset",
        )

    # Metric
    metric = load_metric("rouge")

    def postprocess_text(preds, labels):
        preds = [pred.strip() for pred in preds]
        labels = [label.strip() for label in labels]

        # rougeLSum expects newline after each sentence
        preds = ["\n".join(nltk.sent_tokenize(pred)) for pred in preds]
        labels = ["\n".join(nltk.sent_tokenize(label)) for label in labels]

        return preds, labels

    def compute_metrics(preds, labels):
        decoded_preds = tokenizer.batch_decode(preds, skip_special_tokens=True)
        decoded_labels = tokenizer.batch_decode(labels, skip_special_tokens=True)

        # Some simple post-processing
        decoded_preds, decoded_labels = postprocess_text(decoded_preds, decoded_labels)

        result = metric.compute(predictions=decoded_preds, references=decoded_labels, use_stemmer=True)
        # Extract a few results from ROUGE
        result = {key: value.mid.fmeasure * 100 for key, value in result.items()}

        prediction_lens = [np.count_nonzero(pred != tokenizer.pad_token_id) for pred in preds]
        result["gen_len"] = np.mean(prediction_lens)
        result = {k: round(v, 4) for k, v in result.items()}
        return result

    # Enable tensorboard only on the master node
    has_tensorboard = is_tensorboard_available()
    if has_tensorboard and jax.process_index() == 0:
        try:
            from flax.metrics.tensorboard import SummaryWriter

            summary_writer = SummaryWriter(log_dir=Path(training_args.output_dir))
        except ImportError as ie:
            has_tensorboard = False
            logger.warning(
                f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
            )
    else:
        logger.warning(
            "Unable to display metrics through TensorBoard because the package is not installed: "
            "Please run pip install tensorboard to enable."
        )

    # Initialize our training
    rng = jax.random.PRNGKey(training_args.seed)
    rng, dropout_rng = jax.random.split(rng)

    # Store some constant
    num_epochs = int(training_args.num_train_epochs)
    train_batch_size = int(training_args.per_device_train_batch_size) * jax.device_count()
    eval_batch_size = int(training_args.per_device_eval_batch_size) * jax.device_count()
    steps_per_epoch = len(train_dataset) // train_batch_size
    total_train_steps = steps_per_epoch * num_epochs

    # Create learning rate schedule
    linear_decay_lr_schedule_fn = create_learning_rate_fn(
        len(train_dataset),
        train_batch_size,
        training_args.num_train_epochs,
        training_args.warmup_steps,
        training_args.learning_rate,
    )

    # We use Optax's "masking" functionality to not apply weight decay
    # to bias and LayerNorm scale parameters. decay_mask_fn returns a
    # mask boolean with the same structure as the parameters.
    # The mask is True for parameters that should be decayed.
    # Note that this mask is specifically adapted for FlaxBart.
    # For FlaxT5, one should correct the layer norm parameter naming
    # accordingly - see `run_t5_mlm_flax.py` e.g.
    def decay_mask_fn(params):
        flat_params = traverse_util.flatten_dict(params)
        layer_norm_params = [
            (name, "scale") for name in ["self_attn_layer_norm", "layernorm_embedding", "final_layer_norm"]
        ]
        flat_mask = {path: (path[-1] != "bias" and path[-2:] not in layer_norm_params) for path in flat_params}
        return traverse_util.unflatten_dict(flat_mask)

    # create adam optimizer
    adamw = optax.adamw(
        learning_rate=linear_decay_lr_schedule_fn,
        b1=training_args.adam_beta1,
        b2=training_args.adam_beta2,
        eps=training_args.adam_epsilon,
        weight_decay=training_args.weight_decay,
        mask=decay_mask_fn,
    )

    # Setup train state
    state = TrainState.create(apply_fn=model.__call__, params=model.params, tx=adamw, dropout_rng=dropout_rng)

    # label smoothed cross entropy
    def loss_fn(logits, labels, padding_mask, label_smoothing_factor=0.0):
        """
        The label smoothing implementation is adapted from Flax's official example:
        https://github.com/google/flax/blob/87a211135c6a377c8f29048a1cac3840e38b9da4/examples/wmt/train.py#L104
        """
        vocab_size = logits.shape[-1]
        confidence = 1.0 - label_smoothing_factor
        low_confidence = (1.0 - confidence) / (vocab_size - 1)
        normalizing_constant = -(
            confidence * jnp.log(confidence) + (vocab_size - 1) * low_confidence * jnp.log(low_confidence + 1e-20)
        )
        soft_labels = onehot(labels, vocab_size, on_value=confidence, off_value=low_confidence)

        loss = optax.softmax_cross_entropy(logits, soft_labels)
        loss = loss - normalizing_constant

        # ignore padded tokens from loss
        loss = loss * padding_mask
        loss = loss.sum() / padding_mask.sum()
        return loss

    # Define gradient update step fn
    def train_step(state, batch, label_smoothing_factor=0.0):
        dropout_rng, new_dropout_rng = jax.random.split(state.dropout_rng)

        def compute_loss(params):
            labels = batch.pop("labels")
            logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
            loss = loss_fn(logits, labels, batch["decoder_attention_mask"], label_smoothing_factor)
            return loss

        grad_fn = jax.value_and_grad(compute_loss)
        loss, grad = grad_fn(state.params)
        grad = jax.lax.pmean(grad, "batch")

        new_state = state.apply_gradients(grads=grad, dropout_rng=new_dropout_rng)

        metrics = {"loss": loss, "learning_rate": linear_decay_lr_schedule_fn(state.step)}
        metrics = jax.lax.pmean(metrics, axis_name="batch")

        return new_state, metrics

    # Define eval fn
    def eval_step(params, batch, label_smoothing_factor=0.0):
        labels = batch.pop("labels")
        logits = model(**batch, params=params, train=False)[0]
        loss = loss_fn(logits, labels, batch["decoder_attention_mask"], label_smoothing_factor)

        # summarize metrics
        metrics = {"loss": loss}
        metrics = jax.lax.pmean(metrics, axis_name="batch")
        return metrics

    # Define generation function
    max_length = (
        data_args.val_max_target_length if data_args.val_max_target_length is not None else model.config.max_length
    )
    num_beams = data_args.num_beams if data_args.num_beams is not None else model.config.num_beams
    gen_kwargs = {"max_length": max_length, "num_beams": num_beams}

    def generate_step(params, batch):
        model.params = params
        output_ids = model.generate(batch['pixel_values'], **gen_kwargs)
        return output_ids.sequences

    # Create parallel version of the train and eval step
    p_train_step = jax.pmap(
        partial(train_step, label_smoothing_factor=training_args.label_smoothing_factor), "batch", donate_argnums=(0,)
    )
    p_eval_step = jax.pmap(partial(eval_step, label_smoothing_factor=training_args.label_smoothing_factor), "batch")
    p_generate_step = jax.pmap(generate_step, "batch")

    # Replicate the train state on each device
    state = state.replicate()

    logger.info("***** Running training *****")
    logger.info(f"  Num examples = {len(train_dataset)}")
    logger.info(f"  Num Epochs = {num_epochs}")
    logger.info(f"  Instantaneous batch size per device = {training_args.per_device_train_batch_size}")
    logger.info(f"  Total train batch size (w. parallel & distributed) = {train_batch_size}")
    logger.info(f"  Total optimization steps = {total_train_steps}")

    train_time = 0
    epochs = tqdm(range(num_epochs), desc=f"Epoch ... (1/{num_epochs})", position=0)
    for epoch in epochs:
        # ======================== Training ================================
        train_start = time.time()

        # Create sampling rng
        rng, input_rng = jax.random.split(rng)
        train_metrics = []

        # Generate an epoch by shuffling sampling indices from the train dataset
        train_loader = data_loader(input_rng, train_dataset, train_batch_size, shuffle=True)
        steps_per_epoch = len(train_dataset) // train_batch_size
        # train
        for _ in tqdm(range(steps_per_epoch), desc="Training...", position=1, leave=False):
            batch = next(train_loader)
            state, train_metric = p_train_step(state, batch)
            train_metrics.append(train_metric)

        train_time += time.time() - train_start

        train_metric = unreplicate(train_metric)

        desc = f"Epoch... ({epoch + 1}/{num_epochs} | Loss: {train_metric['loss']}, Learning Rate: {train_metric['learning_rate']})"
        epochs.write(desc)
        epochs.desc = desc
        logger.info(desc)
        with open(os.path.join(training_args.output_dir, f'report.txt'), 'a', encoding='UTF-8') as fp:
            fp.write(desc + '\n')

        # ======================== Evaluating ==============================
        eval_metrics = []
        eval_preds = []
        eval_labels = []

        eval_loader = data_loader(input_rng, eval_dataset, eval_batch_size)
        eval_steps = len(eval_dataset) // eval_batch_size
        for _ in tqdm(range(eval_steps), desc="Evaluating...", position=2, leave=False):
            # Model forward
            batch = next(eval_loader)
            labels = batch["labels"]

            metrics = p_eval_step(state.params, batch)
            eval_metrics.append(metrics)

            # generation
            if data_args.predict_with_generate:
                generated_ids = p_generate_step(state.params, batch)
                eval_preds.extend(jax.device_get(generated_ids.reshape(-1, gen_kwargs["max_length"])))
                eval_labels.extend(jax.device_get(labels.reshape(-1, labels.shape[-1])))

        # normalize eval metrics
        eval_metrics = get_metrics(eval_metrics)
        eval_metrics = jax.tree_map(jnp.mean, eval_metrics)

        # compute ROUGE metrics
        rouge_desc = ""
        if data_args.predict_with_generate:
            rouge_metrics = compute_metrics(eval_preds, eval_labels)
            eval_metrics.update(rouge_metrics)
            rouge_desc = " ".join([f"Eval {key}: {value} |" for key, value in rouge_metrics.items()])

        # Print metrics and update progress bar
        desc = f"Epoch... ({epoch + 1}/{num_epochs} | Eval Loss: {eval_metrics['loss']} | {rouge_desc})"
        epochs.write(desc)
        epochs.desc = desc
        logger.info(desc)
        with open(os.path.join(training_args.output_dir, f'report.txt'), 'a', encoding='UTF-8') as fp:
            fp.write(desc + '\n')

        # Save metrics
        if has_tensorboard and jax.process_index() == 0:
            cur_step = epoch * (len(train_dataset) // train_batch_size)
            write_metric(summary_writer, train_metrics, eval_metrics, train_time, cur_step)

        # ======================== Prediction loop ==============================
        if training_args.do_predict:
            logger.info("*** Predict ***")
    
            pred_metrics = []
            pred_generations = []
            pred_labels = []
    
            pred_loader = data_loader(input_rng, predict_dataset, eval_batch_size)
            pred_steps = len(predict_dataset) // eval_batch_size
            for _ in tqdm(range(pred_steps), desc="Predicting...", position=2, leave=False):
                # Model forward
                batch = next(pred_loader)
                labels = batch["labels"]
    
                metrics = p_eval_step(state.params, batch)
                pred_metrics.append(metrics)
    
                # generation
                if data_args.predict_with_generate:
                    generated_ids = p_generate_step(state.params, batch)
                    pred_generations.extend(jax.device_get(generated_ids.reshape(-1, gen_kwargs["max_length"])))
                    pred_labels.extend(jax.device_get(labels.reshape(-1, labels.shape[-1])))
    
            # normalize prediction metrics
            pred_metrics = get_metrics(pred_metrics)
            pred_metrics = jax.tree_map(jnp.mean, pred_metrics)
    
            # compute ROUGE metrics
            rouge_desc = ""
            if data_args.predict_with_generate:
                rouge_metrics = compute_metrics(pred_generations, pred_labels)
                pred_metrics.update(rouge_metrics)
                rouge_desc = " ".join([f"Predict {key}: {value} |" for key, value in rouge_metrics.items()])
    
            # Print metrics
            desc = f"Predict Loss: {pred_metrics['loss']} | {rouge_desc})"
            epochs.write(desc)
            epochs.desc = desc
            logger.info(desc)
            with open(os.path.join(training_args.output_dir, f'report.txt'), 'a', encoding='UTF-8') as fp:
                fp.write(desc + '\n')

        # save checkpoint after each epoch and push checkpoint to the hub
        if jax.process_index() == 0:
            params = jax.device_get(jax.tree_map(lambda x: x[0], state.params))
            model.save_pretrained(os.path.join(training_args.output_dir, f'ckpt_{epoch+1}'), params=params)
            tokenizer.save_pretrained(training_args.output_dir)
            if training_args.push_to_hub:
                repo.push_to_hub(commit_message=f"Saving weights and logs of epoch {epoch}", blocking=False)


if __name__ == "__main__":
    main()