jaggernaut007
commited on
Commit
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Parent(s):
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Model save
Browse files- README.md +48 -0
- config.json +205 -0
- model.safetensors +3 -0
- special_tokens_map.json +51 -0
- tokenizer.json +0 -0
- tokenizer_config.json +63 -0
- training_args.bin +3 -0
README.md
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---
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license: mit
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base_model: Clinical-AI-Apollo/Medical-NER
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tags:
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- generated_from_trainer
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model-index:
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- name: Medical-NER-finetuned-ner
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results: []
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---
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You
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should probably proofread and complete it, then remove this comment. -->
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# Medical-NER-finetuned-ner
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This model is a fine-tuned version of [Clinical-AI-Apollo/Medical-NER](https://huggingface.co/Clinical-AI-Apollo/Medical-NER) on an unknown dataset.
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## Model description
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More information needed
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## Intended uses & limitations
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More information needed
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## Training and evaluation data
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More information needed
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## Training procedure
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### Training hyperparameters
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The following hyperparameters were used during training:
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- learning_rate: 2e-05
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- train_batch_size: 6
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- eval_batch_size: 4
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- seed: 42
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- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
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- lr_scheduler_type: linear
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- num_epochs: 6
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### Framework versions
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- Transformers 4.39.2
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- Pytorch 1.12.1+cu102
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- Datasets 2.18.0
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- Tokenizers 0.15.2
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config.json
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{
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"_name_or_path": "Clinical-AI-Apollo/Medical-NER",
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"architectures": [
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"DebertaV2ForTokenClassification"
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],
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"attention_probs_dropout_prob": 0.1,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.1,
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"hidden_size": 768,
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"id2label": {
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"0": "O",
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"1": "B-ACTIVITY",
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"2": "I-ACTIVITY",
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"3": "I-ADMINISTRATION",
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"4": "B-ADMINISTRATION",
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"5": "B-AGE",
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"6": "I-AGE",
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"7": "I-AREA",
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"8": "B-AREA",
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"9": "B-BIOLOGICAL_ATTRIBUTE",
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"10": "I-BIOLOGICAL_ATTRIBUTE",
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"11": "I-BIOLOGICAL_STRUCTURE",
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"12": "B-BIOLOGICAL_STRUCTURE",
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"13": "B-CLINICAL_EVENT",
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"14": "I-CLINICAL_EVENT",
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"15": "B-COLOR",
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"16": "I-COLOR",
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"17": "I-COREFERENCE",
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"18": "B-COREFERENCE",
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"19": "B-DATE",
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"20": "I-DATE",
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"21": "I-DETAILED_DESCRIPTION",
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"22": "B-DETAILED_DESCRIPTION",
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"23": "I-DIAGNOSTIC_PROCEDURE",
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"24": "B-DIAGNOSTIC_PROCEDURE",
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"25": "I-DISEASE_DISORDER",
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"26": "B-DISEASE_DISORDER",
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"27": "B-DISTANCE",
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"28": "I-DISTANCE",
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"29": "B-DOSAGE",
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"30": "I-DOSAGE",
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"31": "I-DURATION",
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"32": "B-DURATION",
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"33": "I-FAMILY_HISTORY",
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"34": "B-FAMILY_HISTORY",
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"35": "B-FREQUENCY",
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"36": "I-FREQUENCY",
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"37": "I-HEIGHT",
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"38": "B-HEIGHT",
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"39": "B-HISTORY",
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"40": "I-HISTORY",
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"41": "I-LAB_VALUE",
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"42": "B-LAB_VALUE",
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"43": "I-MASS",
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"44": "B-MASS",
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"45": "I-MEDICATION",
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"46": "B-MEDICATION",
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"47": "I-NONBIOLOGICAL_LOCATION",
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"48": "B-NONBIOLOGICAL_LOCATION",
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"49": "I-OCCUPATION",
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"50": "B-OCCUPATION",
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"51": "B-OTHER_ENTITY",
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"52": "I-OTHER_ENTITY",
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"53": "B-OTHER_EVENT",
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"54": "I-OTHER_EVENT",
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"55": "I-OUTCOME",
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"56": "B-OUTCOME",
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"57": "I-PERSONAL_BACKGROUND",
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"58": "B-PERSONAL_BACKGROUND",
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"59": "B-QUALITATIVE_CONCEPT",
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"60": "I-QUALITATIVE_CONCEPT",
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"61": "I-QUANTITATIVE_CONCEPT",
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"62": "B-QUANTITATIVE_CONCEPT",
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"63": "B-SEVERITY",
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"64": "I-SEVERITY",
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"65": "B-SEX",
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"66": "I-SEX",
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"67": "B-SHAPE",
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"68": "I-SHAPE",
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"69": "B-SIGN_SYMPTOM",
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"70": "I-SIGN_SYMPTOM",
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"71": "B-SUBJECT",
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"72": "I-SUBJECT",
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"73": "B-TEXTURE",
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"74": "I-TEXTURE",
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"75": "B-THERAPEUTIC_PROCEDURE",
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"76": "I-THERAPEUTIC_PROCEDURE",
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"77": "I-TIME",
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"78": "B-TIME",
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"79": "B-VOLUME",
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"80": "I-VOLUME",
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"81": "I-WEIGHT",
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"82": "B-WEIGHT"
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},
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"initializer_range": 0.02,
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"intermediate_size": 3072,
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"label2id": {
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"B-ACTIVITY": 1,
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"B-ADMINISTRATION": 4,
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"B-AGE": 5,
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"B-AREA": 8,
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"B-BIOLOGICAL_ATTRIBUTE": 9,
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"B-BIOLOGICAL_STRUCTURE": 12,
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"B-CLINICAL_EVENT": 13,
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"B-COLOR": 15,
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"B-COREFERENCE": 18,
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"B-DATE": 19,
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"B-DETAILED_DESCRIPTION": 22,
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"B-DIAGNOSTIC_PROCEDURE": 24,
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"B-DISEASE_DISORDER": 26,
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"B-DISTANCE": 27,
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"B-DOSAGE": 29,
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"B-DURATION": 32,
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"B-FAMILY_HISTORY": 34,
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"B-FREQUENCY": 35,
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"B-HEIGHT": 38,
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"B-HISTORY": 39,
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"B-LAB_VALUE": 42,
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"B-MASS": 44,
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"B-MEDICATION": 46,
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"B-NONBIOLOGICAL_LOCATION": 48,
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"B-OCCUPATION": 50,
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"B-OTHER_ENTITY": 51,
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"B-OTHER_EVENT": 53,
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"B-OUTCOME": 56,
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"B-PERSONAL_BACKGROUND": 58,
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"B-QUALITATIVE_CONCEPT": 59,
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"B-QUANTITATIVE_CONCEPT": 62,
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"B-SEVERITY": 63,
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"B-SEX": 65,
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"B-SHAPE": 67,
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"B-SIGN_SYMPTOM": 69,
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"B-SUBJECT": 71,
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"B-TEXTURE": 73,
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"B-THERAPEUTIC_PROCEDURE": 75,
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"B-TIME": 78,
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"B-VOLUME": 79,
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"B-WEIGHT": 82,
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"I-ACTIVITY": 2,
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"I-ADMINISTRATION": 3,
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"I-AGE": 6,
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"I-AREA": 7,
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"I-BIOLOGICAL_ATTRIBUTE": 10,
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"I-BIOLOGICAL_STRUCTURE": 11,
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"I-CLINICAL_EVENT": 14,
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"I-COLOR": 16,
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"I-COREFERENCE": 17,
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"I-DATE": 20,
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"I-DETAILED_DESCRIPTION": 21,
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"I-DIAGNOSTIC_PROCEDURE": 23,
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"I-DISEASE_DISORDER": 25,
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"I-DISTANCE": 28,
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"I-DOSAGE": 30,
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"I-DURATION": 31,
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"I-FAMILY_HISTORY": 33,
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"I-FREQUENCY": 36,
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"I-HEIGHT": 37,
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"I-HISTORY": 40,
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"I-LAB_VALUE": 41,
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"I-MASS": 43,
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"I-MEDICATION": 45,
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"I-NONBIOLOGICAL_LOCATION": 47,
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"I-OCCUPATION": 49,
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"I-OTHER_ENTITY": 52,
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"I-OTHER_EVENT": 54,
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"I-OUTCOME": 55,
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"I-PERSONAL_BACKGROUND": 57,
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"I-QUALITATIVE_CONCEPT": 60,
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"I-QUANTITATIVE_CONCEPT": 61,
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"I-SEVERITY": 64,
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"I-SEX": 66,
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"I-SHAPE": 68,
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"I-SIGN_SYMPTOM": 70,
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"I-SUBJECT": 72,
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"I-TEXTURE": 74,
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"I-THERAPEUTIC_PROCEDURE": 76,
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"I-TIME": 77,
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"I-VOLUME": 80,
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"I-WEIGHT": 81,
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"O": 0
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},
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"layer_norm_eps": 1e-07,
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"max_position_embeddings": 512,
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"max_relative_positions": -1,
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"model_type": "deberta-v2",
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"norm_rel_ebd": "layer_norm",
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"num_attention_heads": 12,
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"num_hidden_layers": 12,
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"pad_token_id": 0,
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"pooler_dropout": 0,
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"pooler_hidden_act": "gelu",
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"pooler_hidden_size": 768,
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"pos_att_type": [
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"p2c",
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"c2p"
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],
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"position_biased_input": false,
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"position_buckets": 256,
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"relative_attention": true,
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"share_att_key": true,
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"torch_dtype": "float32",
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"transformers_version": "4.39.2",
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"type_vocab_size": 0,
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"vocab_size": 128100
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}
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model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:0869169ee520de1aae48681b98e1042b3406f8dfd86a0a06009dfc2fb518eb3b
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size 735605900
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special_tokens_map.json
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{
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"bos_token": {
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"content": "[CLS]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"cls_token": {
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"content": "[CLS]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"eos_token": {
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"content": "[SEP]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"mask_token": {
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"content": "[MASK]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"pad_token": {
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"content": "[PAD]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"sep_token": {
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"content": "[SEP]",
|
39 |
+
"lstrip": false,
|
40 |
+
"normalized": false,
|
41 |
+
"rstrip": false,
|
42 |
+
"single_word": false
|
43 |
+
},
|
44 |
+
"unk_token": {
|
45 |
+
"content": "[UNK]",
|
46 |
+
"lstrip": false,
|
47 |
+
"normalized": true,
|
48 |
+
"rstrip": false,
|
49 |
+
"single_word": false
|
50 |
+
}
|
51 |
+
}
|
tokenizer.json
ADDED
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tokenizer_config.json
ADDED
@@ -0,0 +1,63 @@
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|
1 |
+
{
|
2 |
+
"add_prefix_space": true,
|
3 |
+
"added_tokens_decoder": {
|
4 |
+
"0": {
|
5 |
+
"content": "[PAD]",
|
6 |
+
"lstrip": false,
|
7 |
+
"normalized": false,
|
8 |
+
"rstrip": false,
|
9 |
+
"single_word": false,
|
10 |
+
"special": true
|
11 |
+
},
|
12 |
+
"1": {
|
13 |
+
"content": "[CLS]",
|
14 |
+
"lstrip": false,
|
15 |
+
"normalized": false,
|
16 |
+
"rstrip": false,
|
17 |
+
"single_word": false,
|
18 |
+
"special": true
|
19 |
+
},
|
20 |
+
"2": {
|
21 |
+
"content": "[SEP]",
|
22 |
+
"lstrip": false,
|
23 |
+
"normalized": false,
|
24 |
+
"rstrip": false,
|
25 |
+
"single_word": false,
|
26 |
+
"special": true
|
27 |
+
},
|
28 |
+
"3": {
|
29 |
+
"content": "[UNK]",
|
30 |
+
"lstrip": false,
|
31 |
+
"normalized": true,
|
32 |
+
"rstrip": false,
|
33 |
+
"single_word": false,
|
34 |
+
"special": true
|
35 |
+
},
|
36 |
+
"128000": {
|
37 |
+
"content": "[MASK]",
|
38 |
+
"lstrip": false,
|
39 |
+
"normalized": false,
|
40 |
+
"rstrip": false,
|
41 |
+
"single_word": false,
|
42 |
+
"special": true
|
43 |
+
}
|
44 |
+
},
|
45 |
+
"bos_token": "[CLS]",
|
46 |
+
"clean_up_tokenization_spaces": true,
|
47 |
+
"cls_token": "[CLS]",
|
48 |
+
"do_lower_case": false,
|
49 |
+
"eos_token": "[SEP]",
|
50 |
+
"mask_token": "[MASK]",
|
51 |
+
"max_length": 512,
|
52 |
+
"model_max_length": 1000000000000000019884624838656,
|
53 |
+
"pad_token": "[PAD]",
|
54 |
+
"sep_token": "[SEP]",
|
55 |
+
"sp_model_kwargs": {},
|
56 |
+
"split_by_punct": false,
|
57 |
+
"stride": 0,
|
58 |
+
"tokenizer_class": "DebertaV2Tokenizer",
|
59 |
+
"truncation_side": "right",
|
60 |
+
"truncation_strategy": "longest_first",
|
61 |
+
"unk_token": "[UNK]",
|
62 |
+
"vocab_type": "spm"
|
63 |
+
}
|
training_args.bin
ADDED
@@ -0,0 +1,3 @@
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|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:8280c5db6559eca6ebac8e65c3555c0d423372e0769d5326e1890367e110c0e6
|
3 |
+
size 4463
|