End of training

README.md

@@ -14,18 +14,18 @@ should probably proofread and complete it, then remove this comment. -->
 
 This model is a fine-tuned version of [dmis-lab/biobert-v1.1](https://huggingface.co/dmis-lab/biobert-v1.1) on the None dataset.
 It achieves the following results on the evaluation set:
-- Loss: 0.1433
+- Loss: 0.1445
 - Seqeval classification report:               precision    recall  f1-score   support
 
-         DNA       0.81      0.83      0.82      1593
-         RNA       0.79      0.83      0.81      1400
-   cell_line       0.77      0.82      0.79      1016
-   cell_type       0.98      0.96      0.97     37439
-     protein       0.85      0.86      0.85      2992
+         DNA       0.72      0.80      0.76       507
+         RNA       0.81      0.83      0.82      1593
+   cell_line       0.76      0.78      0.77      5750
+   cell_type       0.76      0.81      0.79       618
+     protein       0.81      0.81      0.81      1452
 
-   micro avg       0.95      0.94      0.95     44440
-   macro avg       0.84      0.86      0.85     44440
-weighted avg       0.95      0.94      0.95     44440
+   micro avg       0.77      0.80      0.78      9920
+   macro avg       0.77      0.81      0.79      9920
+weighted avg       0.77      0.80      0.78      9920
 
 
 ## Model description
@@ -59,41 +59,41 @@ The following hyperparameters were used during training:
 
 | Training Loss | Epoch | Step | Validation Loss | Seqeval classification report                                                                                                                                                                                                                                                                                                                                                                                                                                                                            |
 |:-------------:|:-----:|:----:|:---------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|
-| 0.2673        | 1.0   | 582  | 0.1492          |               precision    recall  f1-score   support
+| 0.2687        | 1.0   | 582  | 0.1504          |               precision    recall  f1-score   support
 
-         DNA       0.79      0.81      0.80      1593
-         RNA       0.78      0.79      0.79      1400
-   cell_line       0.74      0.84      0.79      1016
-   cell_type       0.98      0.96      0.97     37439
-     protein       0.84      0.86      0.85      2992
+         DNA       0.72      0.81      0.76       507
+         RNA       0.78      0.82      0.80      1593
+   cell_line       0.75      0.77      0.76      5750
+   cell_type       0.76      0.81      0.78       618
+     protein       0.80      0.81      0.80      1452
 
-   micro avg       0.95      0.94      0.94     44440
-   macro avg       0.83      0.85      0.84     44440
-weighted avg       0.95      0.94      0.94     44440
+   micro avg       0.76      0.79      0.77      9920
+   macro avg       0.76      0.80      0.78      9920
+weighted avg       0.76      0.79      0.77      9920
  |
-| 0.1408        | 2.0   | 1164 | 0.1469          |               precision    recall  f1-score   support
+| 0.1412        | 2.0   | 1164 | 0.1461          |               precision    recall  f1-score   support
 
-         DNA       0.83      0.80      0.81      1593
-         RNA       0.78      0.83      0.80      1400
-   cell_line       0.75      0.83      0.79      1016
-   cell_type       0.98      0.96      0.97     37439
-     protein       0.84      0.87      0.85      2992
+         DNA       0.72      0.81      0.76       507
+         RNA       0.83      0.79      0.81      1593
+   cell_line       0.75      0.77      0.76      5750
+   cell_type       0.75      0.82      0.78       618
+     protein       0.85      0.75      0.80      1452
 
-   micro avg       0.95      0.94      0.95     44440
-   macro avg       0.84      0.86      0.85     44440
-weighted avg       0.95      0.94      0.95     44440
+   micro avg       0.78      0.78      0.78      9920
+   macro avg       0.78      0.79      0.78      9920
+weighted avg       0.78      0.78      0.78      9920
  |
-| 0.1237        | 3.0   | 1746 | 0.1433          |               precision    recall  f1-score   support
+| 0.1251        | 3.0   | 1746 | 0.1445          |               precision    recall  f1-score   support
 
-         DNA       0.81      0.83      0.82      1593
-         RNA       0.79      0.83      0.81      1400
-   cell_line       0.77      0.82      0.79      1016
-   cell_type       0.98      0.96      0.97     37439
-     protein       0.85      0.86      0.85      2992
+         DNA       0.72      0.80      0.76       507
+         RNA       0.81      0.83      0.82      1593
+   cell_line       0.76      0.78      0.77      5750
+   cell_type       0.76      0.81      0.79       618
+     protein       0.81      0.81      0.81      1452
 
-   micro avg       0.95      0.94      0.95     44440
-   macro avg       0.84      0.86      0.85     44440
-weighted avg       0.95      0.94      0.95     44440
+   micro avg       0.77      0.80      0.78      9920
+   macro avg       0.77      0.81      0.79      9920
+weighted avg       0.77      0.80      0.78      9920
  |