monai
medical
katielink commited on
Commit
32f3b11
1 Parent(s): 9177aa6

update license files

Browse files
Files changed (5) hide show
  1. LICENSE +201 -0
  2. README.md +16 -1
  3. configs/metadata.json +2 -1
  4. docs/README.md +15 -0
  5. docs/data_license.txt +49 -0
LICENSE ADDED
@@ -0,0 +1,201 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ Apache License
2
+ Version 2.0, January 2004
3
+ http://www.apache.org/licenses/
4
+
5
+ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
6
+
7
+ 1. Definitions.
8
+
9
+ "License" shall mean the terms and conditions for use, reproduction,
10
+ and distribution as defined by Sections 1 through 9 of this document.
11
+
12
+ "Licensor" shall mean the copyright owner or entity authorized by
13
+ the copyright owner that is granting the License.
14
+
15
+ "Legal Entity" shall mean the union of the acting entity and all
16
+ other entities that control, are controlled by, or are under common
17
+ control with that entity. For the purposes of this definition,
18
+ "control" means (i) the power, direct or indirect, to cause the
19
+ direction or management of such entity, whether by contract or
20
+ otherwise, or (ii) ownership of fifty percent (50%) or more of the
21
+ outstanding shares, or (iii) beneficial ownership of such entity.
22
+
23
+ "You" (or "Your") shall mean an individual or Legal Entity
24
+ exercising permissions granted by this License.
25
+
26
+ "Source" form shall mean the preferred form for making modifications,
27
+ including but not limited to software source code, documentation
28
+ source, and configuration files.
29
+
30
+ "Object" form shall mean any form resulting from mechanical
31
+ transformation or translation of a Source form, including but
32
+ not limited to compiled object code, generated documentation,
33
+ and conversions to other media types.
34
+
35
+ "Work" shall mean the work of authorship, whether in Source or
36
+ Object form, made available under the License, as indicated by a
37
+ copyright notice that is included in or attached to the work
38
+ (an example is provided in the Appendix below).
39
+
40
+ "Derivative Works" shall mean any work, whether in Source or Object
41
+ form, that is based on (or derived from) the Work and for which the
42
+ editorial revisions, annotations, elaborations, or other modifications
43
+ represent, as a whole, an original work of authorship. For the purposes
44
+ of this License, Derivative Works shall not include works that remain
45
+ separable from, or merely link (or bind by name) to the interfaces of,
46
+ the Work and Derivative Works thereof.
47
+
48
+ "Contribution" shall mean any work of authorship, including
49
+ the original version of the Work and any modifications or additions
50
+ to that Work or Derivative Works thereof, that is intentionally
51
+ submitted to Licensor for inclusion in the Work by the copyright owner
52
+ or by an individual or Legal Entity authorized to submit on behalf of
53
+ the copyright owner. For the purposes of this definition, "submitted"
54
+ means any form of electronic, verbal, or written communication sent
55
+ to the Licensor or its representatives, including but not limited to
56
+ communication on electronic mailing lists, source code control systems,
57
+ and issue tracking systems that are managed by, or on behalf of, the
58
+ Licensor for the purpose of discussing and improving the Work, but
59
+ excluding communication that is conspicuously marked or otherwise
60
+ designated in writing by the copyright owner as "Not a Contribution."
61
+
62
+ "Contributor" shall mean Licensor and any individual or Legal Entity
63
+ on behalf of whom a Contribution has been received by Licensor and
64
+ subsequently incorporated within the Work.
65
+
66
+ 2. Grant of Copyright License. Subject to the terms and conditions of
67
+ this License, each Contributor hereby grants to You a perpetual,
68
+ worldwide, non-exclusive, no-charge, royalty-free, irrevocable
69
+ copyright license to reproduce, prepare Derivative Works of,
70
+ publicly display, publicly perform, sublicense, and distribute the
71
+ Work and such Derivative Works in Source or Object form.
72
+
73
+ 3. Grant of Patent License. Subject to the terms and conditions of
74
+ this License, each Contributor hereby grants to You a perpetual,
75
+ worldwide, non-exclusive, no-charge, royalty-free, irrevocable
76
+ (except as stated in this section) patent license to make, have made,
77
+ use, offer to sell, sell, import, and otherwise transfer the Work,
78
+ where such license applies only to those patent claims licensable
79
+ by such Contributor that are necessarily infringed by their
80
+ Contribution(s) alone or by combination of their Contribution(s)
81
+ with the Work to which such Contribution(s) was submitted. If You
82
+ institute patent litigation against any entity (including a
83
+ cross-claim or counterclaim in a lawsuit) alleging that the Work
84
+ or a Contribution incorporated within the Work constitutes direct
85
+ or contributory patent infringement, then any patent licenses
86
+ granted to You under this License for that Work shall terminate
87
+ as of the date such litigation is filed.
88
+
89
+ 4. Redistribution. You may reproduce and distribute copies of the
90
+ Work or Derivative Works thereof in any medium, with or without
91
+ modifications, and in Source or Object form, provided that You
92
+ meet the following conditions:
93
+
94
+ (a) You must give any other recipients of the Work or
95
+ Derivative Works a copy of this License; and
96
+
97
+ (b) You must cause any modified files to carry prominent notices
98
+ stating that You changed the files; and
99
+
100
+ (c) You must retain, in the Source form of any Derivative Works
101
+ that You distribute, all copyright, patent, trademark, and
102
+ attribution notices from the Source form of the Work,
103
+ excluding those notices that do not pertain to any part of
104
+ the Derivative Works; and
105
+
106
+ (d) If the Work includes a "NOTICE" text file as part of its
107
+ distribution, then any Derivative Works that You distribute must
108
+ include a readable copy of the attribution notices contained
109
+ within such NOTICE file, excluding those notices that do not
110
+ pertain to any part of the Derivative Works, in at least one
111
+ of the following places: within a NOTICE text file distributed
112
+ as part of the Derivative Works; within the Source form or
113
+ documentation, if provided along with the Derivative Works; or,
114
+ within a display generated by the Derivative Works, if and
115
+ wherever such third-party notices normally appear. The contents
116
+ of the NOTICE file are for informational purposes only and
117
+ do not modify the License. You may add Your own attribution
118
+ notices within Derivative Works that You distribute, alongside
119
+ or as an addendum to the NOTICE text from the Work, provided
120
+ that such additional attribution notices cannot be construed
121
+ as modifying the License.
122
+
123
+ You may add Your own copyright statement to Your modifications and
124
+ may provide additional or different license terms and conditions
125
+ for use, reproduction, or distribution of Your modifications, or
126
+ for any such Derivative Works as a whole, provided Your use,
127
+ reproduction, and distribution of the Work otherwise complies with
128
+ the conditions stated in this License.
129
+
130
+ 5. Submission of Contributions. Unless You explicitly state otherwise,
131
+ any Contribution intentionally submitted for inclusion in the Work
132
+ by You to the Licensor shall be under the terms and conditions of
133
+ this License, without any additional terms or conditions.
134
+ Notwithstanding the above, nothing herein shall supersede or modify
135
+ the terms of any separate license agreement you may have executed
136
+ with Licensor regarding such Contributions.
137
+
138
+ 6. Trademarks. This License does not grant permission to use the trade
139
+ names, trademarks, service marks, or product names of the Licensor,
140
+ except as required for reasonable and customary use in describing the
141
+ origin of the Work and reproducing the content of the NOTICE file.
142
+
143
+ 7. Disclaimer of Warranty. Unless required by applicable law or
144
+ agreed to in writing, Licensor provides the Work (and each
145
+ Contributor provides its Contributions) on an "AS IS" BASIS,
146
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
147
+ implied, including, without limitation, any warranties or conditions
148
+ of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
149
+ PARTICULAR PURPOSE. You are solely responsible for determining the
150
+ appropriateness of using or redistributing the Work and assume any
151
+ risks associated with Your exercise of permissions under this License.
152
+
153
+ 8. Limitation of Liability. In no event and under no legal theory,
154
+ whether in tort (including negligence), contract, or otherwise,
155
+ unless required by applicable law (such as deliberate and grossly
156
+ negligent acts) or agreed to in writing, shall any Contributor be
157
+ liable to You for damages, including any direct, indirect, special,
158
+ incidental, or consequential damages of any character arising as a
159
+ result of this License or out of the use or inability to use the
160
+ Work (including but not limited to damages for loss of goodwill,
161
+ work stoppage, computer failure or malfunction, or any and all
162
+ other commercial damages or losses), even if such Contributor
163
+ has been advised of the possibility of such damages.
164
+
165
+ 9. Accepting Warranty or Additional Liability. While redistributing
166
+ the Work or Derivative Works thereof, You may choose to offer,
167
+ and charge a fee for, acceptance of support, warranty, indemnity,
168
+ or other liability obligations and/or rights consistent with this
169
+ License. However, in accepting such obligations, You may act only
170
+ on Your own behalf and on Your sole responsibility, not on behalf
171
+ of any other Contributor, and only if You agree to indemnify,
172
+ defend, and hold each Contributor harmless for any liability
173
+ incurred by, or claims asserted against, such Contributor by reason
174
+ of your accepting any such warranty or additional liability.
175
+
176
+ END OF TERMS AND CONDITIONS
177
+
178
+ APPENDIX: How to apply the Apache License to your work.
179
+
180
+ To apply the Apache License to your work, attach the following
181
+ boilerplate notice, with the fields enclosed by brackets "[]"
182
+ replaced with your own identifying information. (Don't include
183
+ the brackets!) The text should be enclosed in the appropriate
184
+ comment syntax for the file format. We also recommend that a
185
+ file or class name and description of purpose be included on the
186
+ same "printed page" as the copyright notice for easier
187
+ identification within third-party archives.
188
+
189
+ Copyright 2022 Keno Bressem and Lisa Adams
190
+
191
+ Licensed under the Apache License, Version 2.0 (the "License");
192
+ you may not use this file except in compliance with the License.
193
+ You may obtain a copy of the License at
194
+
195
+ http://www.apache.org/licenses/LICENSE-2.0
196
+
197
+ Unless required by applicable law or agreed to in writing, software
198
+ distributed under the License is distributed on an "AS IS" BASIS,
199
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
200
+ See the License for the specific language governing permissions and
201
+ limitations under the License.
README.md CHANGED
@@ -3,7 +3,7 @@ tags:
3
  - monai
4
  - medical
5
  library_name: monai
6
- license: unknown
7
  ---
8
  # Model Overview
9
  A pre-trained model for volumetric (3D) segmentation of brain tumor subregions from multimodal MRIs based on BraTS 2018 data. The whole pipeline is modified from [clara_pt_brain_mri_segmentation](https://catalog.ngc.nvidia.com/orgs/nvidia/teams/med/models/clara_pt_brain_mri_segmentation).
@@ -101,3 +101,18 @@ This is an example, not to be used for diagnostic purposes.
101
  # References
102
 
103
  [1] Myronenko, Andriy. "3D MRI brain tumor segmentation using autoencoder regularization." International MICCAI Brainlesion Workshop. Springer, Cham, 2018. https://arxiv.org/abs/1810.11654.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
3
  - monai
4
  - medical
5
  library_name: monai
6
+ license: apache-2.0
7
  ---
8
  # Model Overview
9
  A pre-trained model for volumetric (3D) segmentation of brain tumor subregions from multimodal MRIs based on BraTS 2018 data. The whole pipeline is modified from [clara_pt_brain_mri_segmentation](https://catalog.ngc.nvidia.com/orgs/nvidia/teams/med/models/clara_pt_brain_mri_segmentation).
 
101
  # References
102
 
103
  [1] Myronenko, Andriy. "3D MRI brain tumor segmentation using autoencoder regularization." International MICCAI Brainlesion Workshop. Springer, Cham, 2018. https://arxiv.org/abs/1810.11654.
104
+
105
+ # License
106
+ Copyright (c) MONAI Consortium
107
+
108
+ Licensed under the Apache License, Version 2.0 (the "License");
109
+ you may not use this file except in compliance with the License.
110
+ You may obtain a copy of the License at
111
+
112
+ http://www.apache.org/licenses/LICENSE-2.0
113
+
114
+ Unless required by applicable law or agreed to in writing, software
115
+ distributed under the License is distributed on an "AS IS" BASIS,
116
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
117
+ See the License for the specific language governing permissions and
118
+ limitations under the License.
configs/metadata.json CHANGED
@@ -1,7 +1,8 @@
1
  {
2
  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
3
- "version": "0.2.1",
4
  "changelog": {
 
5
  "0.2.1": "fix network_data_format error",
6
  "0.2.0": "unify naming",
7
  "0.1.1": "update for MetaTensor",
 
1
  {
2
  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
3
+ "version": "0.3.0",
4
  "changelog": {
5
+ "0.3.0": "update license files",
6
  "0.2.1": "fix network_data_format error",
7
  "0.2.0": "unify naming",
8
  "0.1.1": "update for MetaTensor",
docs/README.md CHANGED
@@ -94,3 +94,18 @@ This is an example, not to be used for diagnostic purposes.
94
  # References
95
 
96
  [1] Myronenko, Andriy. "3D MRI brain tumor segmentation using autoencoder regularization." International MICCAI Brainlesion Workshop. Springer, Cham, 2018. https://arxiv.org/abs/1810.11654.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
94
  # References
95
 
96
  [1] Myronenko, Andriy. "3D MRI brain tumor segmentation using autoencoder regularization." International MICCAI Brainlesion Workshop. Springer, Cham, 2018. https://arxiv.org/abs/1810.11654.
97
+
98
+ # License
99
+ Copyright (c) MONAI Consortium
100
+
101
+ Licensed under the Apache License, Version 2.0 (the "License");
102
+ you may not use this file except in compliance with the License.
103
+ You may obtain a copy of the License at
104
+
105
+ http://www.apache.org/licenses/LICENSE-2.0
106
+
107
+ Unless required by applicable law or agreed to in writing, software
108
+ distributed under the License is distributed on an "AS IS" BASIS,
109
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
110
+ See the License for the specific language governing permissions and
111
+ limitations under the License.
docs/data_license.txt ADDED
@@ -0,0 +1,49 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ Third Party Licenses
2
+ -----------------------------------------------------------------------
3
+
4
+ /*********************************************************************/
5
+ i. Multimodal Brain Tumor Segmentation Challenge 2018
6
+ https://www.med.upenn.edu/sbia/brats2018/data.html
7
+ /*********************************************************************/
8
+
9
+ Data Usage Agreement / Citations
10
+
11
+ You are free to use and/or refer to the BraTS datasets in your own
12
+ research, provided that you always cite the following two manuscripts:
13
+
14
+ [1] Menze BH, Jakab A, Bauer S, Kalpathy-Cramer J, Farahani K, Kirby
15
+ [J, Burren Y, Porz N, Slotboom J, Wiest R, Lanczi L, Gerstner E, Weber
16
+ [MA, Arbel T, Avants BB, Ayache N, Buendia P, Collins DL, Cordier N,
17
+ [Corso JJ, Criminisi A, Das T, Delingette H, Demiralp Γ, Durst CR,
18
+ [Dojat M, Doyle S, Festa J, Forbes F, Geremia E, Glocker B, Golland P,
19
+ [Guo X, Hamamci A, Iftekharuddin KM, Jena R, John NM, Konukoglu E,
20
+ [Lashkari D, Mariz JA, Meier R, Pereira S, Precup D, Price SJ, Raviv
21
+ [TR, Reza SM, Ryan M, Sarikaya D, Schwartz L, Shin HC, Shotton J,
22
+ [Silva CA, Sousa N, Subbanna NK, Szekely G, Taylor TJ, Thomas OM,
23
+ [Tustison NJ, Unal G, Vasseur F, Wintermark M, Ye DH, Zhao L, Zhao B,
24
+ [Zikic D, Prastawa M, Reyes M, Van Leemput K. "The Multimodal Brain
25
+ [Tumor Image Segmentation Benchmark (BRATS)", IEEE Transactions on
26
+ [Medical Imaging 34(10), 1993-2024 (2015) DOI:
27
+ [10.1109/TMI.2014.2377694
28
+
29
+ [2] Bakas S, Akbari H, Sotiras A, Bilello M, Rozycki M, Kirby JS,
30
+ [Freymann JB, Farahani K, Davatzikos C. "Advancing The Cancer Genome
31
+ [Atlas glioma MRI collections with expert segmentation labels and
32
+ [radiomic features", Nature Scientific Data, 4:170117 (2017) DOI:
33
+ [10.1038/sdata.2017.117
34
+
35
+ In addition, if there are no restrictions imposed from the
36
+ journal/conference you submit your paper about citing "Data
37
+ Citations", please be specific and also cite the following:
38
+
39
+ [3] Bakas S, Akbari H, Sotiras A, Bilello M, Rozycki M, Kirby J,
40
+ [Freymann J, Farahani K, Davatzikos C. "Segmentation Labels and
41
+ [Radiomic Features for the Pre-operative Scans of the TCGA-GBM
42
+ [collection", The Cancer Imaging Archive, 2017. DOI:
43
+ [10.7937/K9/TCIA.2017.KLXWJJ1Q
44
+
45
+ [4] Bakas S, Akbari H, Sotiras A, Bilello M, Rozycki M, Kirby J,
46
+ [Freymann J, Farahani K, Davatzikos C. "Segmentation Labels and
47
+ [Radiomic Features for the Pre-operative Scans of the TCGA-LGG
48
+ [collection", The Cancer Imaging Archive, 2017. DOI:
49
+ [10.7937/K9/TCIA.2017.GJQ7R0EF