{ "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", "version": "0.2.3", "changelog": { "0.2.3": "fix PYTHONPATH in readme.md", "0.2.2": "add name tag", "0.2.1": "fix license Copyright error", "0.2.0": "update license files", "0.1.2": "Add training support for whole brain segmentation, users can use active learning in the MONAI Label", "0.1.1": "Fix dimension according to MONAI 1.0 and fix readme file", "0.1.0": "complete the model package" }, "monai_version": "1.0.0", "pytorch_version": "1.10.0", "numpy_version": "1.21.2", "optional_packages_version": { "nibabel": "3.2.1", "pytorch-ignite": "0.4.8", "einops": "0.4.1", "fire": "0.4.0", "timm": "0.6.7", "torchvision": "0.11.1" }, "name": "Whole brain large UNEST segmentation", "task": "Whole Brain Segmentation", "description": "A 3D transformer-based model for whole brain segmentation from T1W MRI image", "authors": "Vanderbilt University + MONAI team", "copyright": "Copyright (c) MONAI Consortium", "data_source": "", "data_type": "nibabel", "image_classes": "single channel data, intensity scaled to [0, 1]", "label_classes": "133 Classes", "pred_classes": "133 Classes", "eval_metrics": { "mean_dice": 0.71 }, "intended_use": "This is an example, not to be used for diagnostic purposes", "references": [ "Xin, et al. Characterizing Renal Structures with 3D Block Aggregate Transformers. arXiv preprint arXiv:2203.02430 (2022). https://arxiv.org/pdf/2203.02430.pdf" ], "network_data_format": { "inputs": { "image": { "type": "image", "format": "hounsfield", "modality": "MRI", "num_channels": 1, "spatial_shape": [ 96, 96, 96 ], "dtype": "float32", "value_range": [ 0, 1 ], "is_patch_data": true, "channel_def": { "0": "image" } } }, "outputs": { "pred": { "type": "image", "format": "segmentation", "num_channels": 133, "spatial_shape": [ 96, 96, 96 ], "dtype": "float32", "value_range": [ 0, 1 ], "is_patch_data": true, "channel_def": { "0": "background", "1": "3rd-Ventricle", "2": "4th-Ventricle", "3": "Right-Accumbens-Area", "4": "Left-Accumbens-Area", "5": "Right-Amygdala", "6": "Left-Amygdala", "7": "Brain-Stem", "8": "Right-Caudate", "9": "Left-Caudate", "10": "Right-Cerebellum-Exterior", "11": "Left-Cerebellum-Exterior", "12": "Right-Cerebellum-White-Matter", "13": "Left-Cerebellum-White-Matter", "14": "Right-Cerebral-White-Matter", "15": "Left-Cerebral-White-Matter", "16": "Right-Hippocampus", "17": "Left-Hippocampus", "18": "Right-Inf-Lat-Vent", "19": "Left-Inf-Lat-Vent", "20": "Right-Lateral-Ventricle", "21": "Left-Lateral-Ventricle", "22": "Right-Pallidum", "23": "Left-Pallidum", "24": "Right-Putamen", "25": "Left-Putamen", "26": "Right-Thalamus-Proper", "27": "Left-Thalamus-Proper", "28": "Right-Ventral-DC", "29": "Left-Ventral-DC", "30": "Cerebellar-Vermal-Lobules-I-V", "31": "Cerebellar-Vermal-Lobules-VI-VII", "32": "Cerebellar-Vermal-Lobules-VIII-X", "33": "Left-Basal-Forebrain", "34": "Right-Basal-Forebrain", "35": "Right-ACgG--anterior-cingulate-gyrus", "36": "Left-ACgG--anterior-cingulate-gyrus", "37": "Right-AIns--anterior-insula", "38": "Left-AIns--anterior-insula", "39": "Right-AOrG--anterior-orbital-gyrus", "40": "Left-AOrG--anterior-orbital-gyrus", "41": "Right-AnG---angular-gyrus", "42": "Left-AnG---angular-gyrus", "43": "Right-Calc--calcarine-cortex", "44": "Left-Calc--calcarine-cortex", "45": "Right-CO----central-operculum", "46": "Left-CO----central-operculum", "47": "Right-Cun---cuneus", "48": "Left-Cun---cuneus", "49": "Right-Ent---entorhinal-area", "50": "Left-Ent---entorhinal-area", "51": "Right-FO----frontal-operculum", "52": "Left-FO----frontal-operculum", "53": "Right-FRP---frontal-pole", "54": "Left-FRP---frontal-pole", "55": "Right-FuG---fusiform-gyrus ", "56": "Left-FuG---fusiform-gyrus", "57": "Right-GRe---gyrus-rectus", "58": "Left-GRe---gyrus-rectus", "59": "Right-IOG---inferior-occipital-gyrus", "60": "Left-IOG---inferior-occipital-gyrus", "61": "Right-ITG---inferior-temporal-gyrus", "62": "Left-ITG---inferior-temporal-gyrus", "63": "Right-LiG---lingual-gyrus", "64": "Left-LiG---lingual-gyrus", "65": "Right-LOrG--lateral-orbital-gyrus", "66": "Left-LOrG--lateral-orbital-gyrus", "67": "Right-MCgG--middle-cingulate-gyrus", "68": "Left-MCgG--middle-cingulate-gyrus", "69": "Right-MFC---medial-frontal-cortex", "70": "Left-MFC---medial-frontal-cortex", "71": "Right-MFG---middle-frontal-gyrus", "72": "Left-MFG---middle-frontal-gyrus", "73": "Right-MOG---middle-occipital-gyrus", "74": "Left-MOG---middle-occipital-gyrus", "75": "Right-MOrG--medial-orbital-gyrus", "76": "Left-MOrG--medial-orbital-gyrus", "77": "Right-MPoG--postcentral-gyrus", "78": "Left-MPoG--postcentral-gyrus", "79": "Right-MPrG--precentral-gyrus", "80": "Left-MPrG--precentral-gyrus", "81": "Right-MSFG--superior-frontal-gyrus", "82": "Left-MSFG--superior-frontal-gyrus", "83": "Right-MTG---middle-temporal-gyrus", "84": "Left-MTG---middle-temporal-gyrus", "85": "Right-OCP---occipital-pole", "86": "Left-OCP---occipital-pole", "87": "Right-OFuG--occipital-fusiform-gyrus", "88": "Left-OFuG--occipital-fusiform-gyrus", "89": "Right-OpIFG-opercular-part-of-the-IFG", "90": "Left-OpIFG-opercular-part-of-the-IFG", "91": "Right-OrIFG-orbital-part-of-the-IFG", "92": "Left-OrIFG-orbital-part-of-the-IFG", "93": "Right-PCgG--posterior-cingulate-gyrus", "94": "Left-PCgG--posterior-cingulate-gyrus", "95": "Right-PCu---precuneus", "96": "Left-PCu---precuneus", "97": "Right-PHG---parahippocampal-gyrus", "98": "Left-PHG---parahippocampal-gyrus", "99": "Right-PIns--posterior-insula", "100": "Left-PIns--posterior-insula", "101": "Right-PO----parietal-operculum", "102": "Left-PO----parietal-operculum", "103": "Right-PoG---postcentral-gyrus", "104": "Left-PoG---postcentral-gyrus", "105": "Right-POrG--posterior-orbital-gyrus", "106": "Left-POrG--posterior-orbital-gyrus", "107": "Right-PP----planum-polare", "108": "Left-PP----planum-polare", "109": "Right-PrG---precentral-gyrus", "110": "Left-PrG---precentral-gyrus", "111": "Right-PT----planum-temporale", "112": "Left-PT----planum-temporale", "113": "Right-SCA---subcallosal-area", "114": "Left-SCA---subcallosal-area", "115": "Right-SFG---superior-frontal-gyrus", "116": "Left-SFG---superior-frontal-gyrus", "117": "Right-SMC---supplementary-motor-cortex", "118": "Left-SMC---supplementary-motor-cortex", "119": "Right-SMG---supramarginal-gyrus", "120": "Left-SMG---supramarginal-gyrus", "121": "Right-SOG---superior-occipital-gyrus", "122": "Left-SOG---superior-occipital-gyrus", "123": "Right-SPL---superior-parietal-lobule", "124": "Left-SPL---superior-parietal-lobule", "125": "Right-STG---superior-temporal-gyrus", "126": "Left-STG---superior-temporal-gyrus", "127": "Right-TMP---temporal-pole", "128": "Left-TMP---temporal-pole", "129": "Right-TrIFG-triangular-part-of-the-IFG", "130": "Left-TrIFG-triangular-part-of-the-IFG", "131": "Right-TTG---transverse-temporal-gyrus", "132": "Left-TTG---transverse-temporal-gyrus" } } } } }