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README.md ADDED
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+ ---
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+ language: "pt"
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+ widget:
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+ - text: "Dispneia venoso central em subclavia D duplolumen recebendo solução salina e glicosada em BI."
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+ - text: "Paciente com Sepse pulmonar em D8 tazocin (paciente não recebeu por 2 dias Atb)."
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+ - text: "FOI REALIZADO CURSO DE ATB COM LEVOFLOXACINA POR 7 DIAS."
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+
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+ datasets:
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+ - SemClinBr
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+ thumbnail: "https://raw.githubusercontent.com/HAILab-PUCPR/BioBERTpt/master/images/logo-biobertpr1.png"
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+ ---
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+
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+ # Portuguese Clinical NER - Laboratory
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+
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+ The Laboratory NER model is part of the [BioBERTpt project](https://www.aclweb.org/anthology/2020.clinicalnlp-1.7/), where 13 models of clinical entities (compatible with UMLS) were trained. All NER model from "pucpr" user was trained from the Brazilian clinical corpus [SemClinBr](https://github.com/HAILab-PUCPR/SemClinBr), with 10 epochs and IOB2 format, from BioBERTpt(all) model.
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+
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+ ## Questions?
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+
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+ Post a Github issue on the [BioBERTpt repo](https://github.com/HAILab-PUCPR/BioBERTpt).
config.json ADDED
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+ {
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+ "_name_or_path": "pucpr/biobertpt-all",
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+ "_num_labels": 2,
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+ "architectures": [
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+ "BertForTokenClassification"
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+ ],
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+ "attention_probs_dropout_prob": 0.1,
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+ "directionality": "bidi",
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+ "gradient_checkpointing": false,
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+ "hidden_act": "gelu",
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+ "hidden_dropout_prob": 0.1,
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+ "hidden_size": 768,
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+ "id2label": {
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+ "0": "O",
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+ "1": "B-LaboratoryOrTestResult",
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+ "2": "I-LaboratoryOrTestResult"
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+ "B-LaboratoryOrTestResult": 1,
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+ "I-LaboratoryOrTestResult": 2
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+ },
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+ "layer_norm_eps": 1e-12,
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+ "max_position_embeddings": 512,
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+ "model_type": "bert",
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+ "num_attention_heads": 12,
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+ "num_hidden_layers": 12,
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+ "output_past": true,
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+ "pad_token_id": null,
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+ "pooler_fc_size": 768,
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+ "pooler_num_attention_heads": 12,
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+ "pooler_num_fc_layers": 3,
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+ "pooler_size_per_head": 128,
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+ "pooler_type": "first_token_transform",
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+ "position_embedding_type": "absolute",
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+ "transformers_version": "4.8.2",
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+ "type_vocab_size": 2,
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+ "use_cache": true,
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+ "vocab_size": 119547
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+ }
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special_tokens_map.json ADDED
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+ {"unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]"}
tokenizer_config.json ADDED
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+ {"do_lower_case": true, "max_len": 512, "unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]"}
vocab.txt ADDED
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