from haystack.nodes import TfidfRetriever from haystack.document_stores import InMemoryDocumentStore import configparser import spacy import re from spacy.matcher import Matcher import streamlit as st from markdown import markdown from annotated_text import annotation from haystack.schema import Document from typing import List, Tuple, Text from utils.preprocessing import processingpipeline config = configparser.ConfigParser() config.read_file(open('paramconfig.cfg')) def tokenize_lexical_query(query:str)-> List[str]: """ Removes the stop words from query and returns the list of important keywords in query. For the lexical search the relevent paragraphs in document are retreived using TfIDFretreiver from Haystack. However to highlight these keywords we need the tokenized form of query. Params -------- query: string which represents either list of keywords user is looking for or a query in form of Question. Return ----------- token_list: list of important keywords in the query. """ nlp = spacy.load("en_core_web_sm") token_list = [token.text.lower() for token in nlp(query) if not token.is_stop] return token_list def runSpacyMatcher(token_list:List[str], document:Text): """ Using the spacy in backend finds the keywords in the document using the Matcher class from spacy. We can alternatively use the regex, but spacy finds all keywords in serialized manner which helps in annotation of answers. Params ------- token_list: this is token list which tokenize_lexical_query function returns document: text in which we need to find the tokens Return -------- matches: List of [start_index, end_index] in the spacydoc(at word level not character) for the keywords in token list. spacydoc: the keyword index in the spacydoc are at word level and not character, therefore to allow the annotator to work seamlessly we return the spacydoc. """ nlp = spacy.load("en_core_web_sm") spacydoc = nlp(document) matcher = Matcher(nlp.vocab) token_pattern = [[{"LOWER":token}] for token in token_list] matcher.add(",".join(token_list), token_pattern) spacymatches = matcher(spacydoc) # getting start and end index in spacydoc so that annotator can work seamlessly matches = [] for match_id, start, end in spacymatches: matches = matches + [[start, end]] return matches, spacydoc def runRegexMatcher(token_list:List[str], document:Text): """ Using the regex in backend finds the keywords in the document. Params ------- token_list: this is token list which tokenize_lexical_query function returns document: text in which we need to find the tokens Return -------- matches: List of [start_index, end_index] in the document for the keywords in token list at character level. document: the keyword index returned by regex are at character level, therefore to allow the annotator to work seamlessly we return the text back. """ matches = [] for token in token_list: matches = matches + [[val.start(), val.start()+ len(token)] for val in re.finditer(token, document)] return matches, document def searchAnnotator(matches: List[List[int]], document): """ Annotates the text in the document defined by list of [start index, end index] Example: "How are you today", if document type is text, matches = [[0,3]] will give answer = "How", however in case we used the spacy matcher then the matches = [[0,3]] will give answer = "How are you". However if spacy is used to find "How" then the matches = [[0,1]] for the string defined above. """ start = 0 annotated_text = "" for match in matches: start_idx = match[0] end_idx = match[1] annotated_text = annotated_text + document[start:start_idx].text + str(annotation(body=document[start_idx:end_idx].text, label="ANSWER", background="#964448", color='#ffffff')) start = end_idx st.write( markdown(annotated_text), unsafe_allow_html=True, ) def lexical_search(query:Text,documents:List[Document]): """ Performs the Lexical search on the List of haystack documents which is returned by preprocessing Pipeline. """ document_store = InMemoryDocumentStore() document_store.write_documents(documents) # Haystack Retriever works with document stores only. retriever = TfidfRetriever(document_store) results = retriever.retrieve(query=query, top_k= int(config.get('lexical_search','TOP_K'))) query_tokens = tokenize_lexical_query(query) for result in results: matches, doc = runSpacyMatcher(query_tokens,result.content) searchAnnotator(matches, doc) def runLexicalPreprocessingPipeline()->List[Document]: """ creates the pipeline and runs the preprocessing pipeline, the params for pipeline are fetched from paramconfig Return -------------- List[Document]: When preprocessing pipeline is run, the output dictionary has four objects. For the Haysatck implementation of SDG classification we, need to use the List of Haystack Document, which can be fetched by key = 'documents' on output. """ file_path = st.session_state['filepath'] file_name = st.session_state['filename'] sdg_processing_pipeline = processingpipeline() split_by = config.get('lexical_search','SPLIT_BY') split_length = int(config.get('lexical_search','SPLIT_LENGTH')) output_lexical_pre = sdg_processing_pipeline.run(file_paths = file_path, params= {"FileConverter": {"file_path": file_path, \ "file_name": file_name}, "UdfPreProcessor": {"removePunc": False, \ "split_by": split_by, \ "split_length":split_length}}) return output_lexical_pre['documents']