from haystack.nodes import TfidfRetriever from haystack.document_stores import InMemoryDocumentStore import spacy import re from spacy.matcher import Matcher import streamlit as st from markdown import markdown from annotated_text import annotation from haystack.schema import Document from typing import List, Text from utils.preprocessing import processingpipeline from utils.streamlitcheck import check_streamlit import configparser import logging try: from termcolor import colored except: pass try: import streamlit as st except ImportError: logging.info("Streamlit not installed") config = configparser.ConfigParser() try: config.read_file(open('paramconfig.cfg')) except Exception: logging.warning("paramconfig file not found") st.info("Please place the paramconfig file in the same directory as app.py") def runLexicalPreprocessingPipeline(file_path, file_name)->List[Document]: """ creates the pipeline and runs the preprocessing pipeline, the params for pipeline are fetched from paramconfig Params ------------ file_name: filename, in case of streamlit application use st.session_state['filename'] file_path: filepath, in case of streamlit application use st.session_state['filepath'] Return -------------- List[Document]: When preprocessing pipeline is run, the output dictionary has four objects. For the lexicaal search using TFIDFRetriever we need to use the List of Haystack Document, which can be fetched by key = 'documents' on output. """ lexical_processing_pipeline = processingpipeline() split_by = config.get('lexical_search','SPLIT_BY') split_length = int(config.get('lexical_search','SPLIT_LENGTH')) split_overlap = int(config.get('lexical_search','SPLIT_OVERLAP')) output_lexical_pre = lexical_processing_pipeline.run(file_paths = file_path, params= {"FileConverter": {"file_path": file_path, \ "file_name": file_name}, "UdfPreProcessor": {"removePunc": False, \ "split_by": split_by, \ "split_length":split_length,\ "split_overlap": split_overlap}}) return output_lexical_pre def tokenize_lexical_query(query:str)-> List[str]: """ Removes the stop words from query and returns the list of important keywords in query. For the lexical search the relevent paragraphs in document are retreived using TfIDFretreiver from Haystack. However to highlight these keywords we need the tokenized form of query. Params -------- query: string which represents either list of keywords user is looking for or a query in form of Question. Return ----------- token_list: list of important keywords in the query. """ nlp = spacy.load("en_core_web_sm") token_list = [token.text.lower() for token in nlp(query) if not (token.is_stop or token.is_punct)] return token_list def runSpacyMatcher(token_list:List[str], document:Text): """ Using the spacy in backend finds the keywords in the document using the Matcher class from spacy. We can alternatively use the regex, but spacy finds all keywords in serialized manner which helps in annotation of answers. Params ------- token_list: this is token list which tokenize_lexical_query function returns document: text in which we need to find the tokens Return -------- matches: List of [start_index, end_index] in the spacydoc(at word level not character) for the keywords in token list. spacydoc: the keyword index in the spacydoc are at word level and not character, therefore to allow the annotator to work seamlessly we return the spacydoc. """ nlp = spacy.load("en_core_web_sm") spacydoc = nlp(document) matcher = Matcher(nlp.vocab) token_pattern = [[{"LOWER":token}] for token in token_list] matcher.add(",".join(token_list), token_pattern) spacymatches = matcher(spacydoc) # getting start and end index in spacydoc so that annotator can work seamlessly matches = [] for match_id, start, end in spacymatches: matches = matches + [[start, end]] return matches, spacydoc def runRegexMatcher(token_list:List[str], document:Text): """ Using the regex in backend finds the keywords in the document. Params ------- token_list: this is token list which tokenize_lexical_query function returns document: text in which we need to find the tokens Return -------- matches: List of [start_index, end_index] in the document for the keywords in token list at character level. document: the keyword index returned by regex are at character level, therefore to allow the annotator to work seamlessly we return the text back. """ matches = [] for token in token_list: matches = (matches + [[val.start(), val.start() + len(token)] for val in re.finditer(token, document)]) return matches, document def spacyAnnotator(matches: List[List[int]], document:spacy.tokens.doc.Doc): """ This is spacy Annotator and needs spacy.doc Annotates the text in the document defined by list of [start index, end index] Example: "How are you today", if document type is text, matches = [[0,3]] will give answer = "How", however in case we used the spacy matcher then the matches = [[0,3]] will give answer = "How are you". However if spacy is used to find "How" then the matches = [[0,1]] for the string defined above. Params ----------- matches: As mentioned its list of list. Example [[0,1],[10,13]] document: document which needs to be indexed. Return -------- will send the output to either app front end using streamlit or write directly to output screen. """ start = 0 annotated_text = "" for match in matches: start_idx = match[0] end_idx = match[1] if check_streamlit(): annotated_text = (annotated_text + document[start:start_idx].text + str(annotation(body=document[start_idx:end_idx].text, label="ANSWER", background="#964448", color='#ffffff'))) else: annotated_text = (annotated_text + document[start:start_idx].text + colored(document[start_idx:end_idx].text, "green", attrs = ['bold'])) start = end_idx annotated_text = annotated_text + document[end_idx:].text if check_streamlit(): st.write( markdown(annotated_text), unsafe_allow_html=True, ) else: print(annotated_text) def lexical_search(query:Text,documents:List[Document]): """ Performs the Lexical search on the List of haystack documents which is returned by preprocessing Pipeline. Params ------- query: Keywords that need to be searche in documents. documents: List of Haystack documents returned by preprocessing pipeline. """ document_store = InMemoryDocumentStore() document_store.write_documents(documents) # Haystack Retriever works with document stores only. retriever = TfidfRetriever(document_store) results = retriever.retrieve(query=query, top_k= int(config.get('lexical_search','TOP_K'))) query_tokens = tokenize_lexical_query(query) for count, result in enumerate(results): matches, doc = runSpacyMatcher(query_tokens,result.content) if len(matches) != 0: if check_streamlit(): st.write("Result {}".format(count+1)) else: print("Results {}".format(count +1)) spacyAnnotator(matches, doc)