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Build error
PascalNotin
commited on
Commit
•
9103754
1
Parent(s):
26ed57d
Added seaborn and removed auth token
Browse files- app.py +3 -3
- requirements.txt +2 -1
app.py
CHANGED
@@ -82,11 +82,11 @@ def get_mutated_protein(sequence,mutant):
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def score_and_create_matrix_all_singles(sequence,mutation_range_start=None,mutation_range_end=None,model_type="Small",scoring_mirror=False,batch_size_inference=20,num_workers=0,AA_vocab=AA_vocab):
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if model_type=="Small":
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model = tranception.model_pytorch.TranceptionLMHeadModel.from_pretrained(pretrained_model_name_or_path="PascalNotin/Tranception_Small"
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elif model_type=="Medium":
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model = tranception.model_pytorch.TranceptionLMHeadModel.from_pretrained(pretrained_model_name_or_path="PascalNotin/Tranception_Medium"
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elif model_type=="Large":
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model = tranception.model_pytorch.TranceptionLMHeadModel.from_pretrained(pretrained_model_name_or_path="PascalNotin/Tranception_Large"
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model.config.tokenizer = tokenizer
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all_single_mutants = create_all_single_mutants(sequence,AA_vocab,mutation_range_start,mutation_range_end)
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scores = model.score_mutants(DMS_data=all_single_mutants,
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def score_and_create_matrix_all_singles(sequence,mutation_range_start=None,mutation_range_end=None,model_type="Small",scoring_mirror=False,batch_size_inference=20,num_workers=0,AA_vocab=AA_vocab):
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if model_type=="Small":
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model = tranception.model_pytorch.TranceptionLMHeadModel.from_pretrained(pretrained_model_name_or_path="PascalNotin/Tranception_Small")
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elif model_type=="Medium":
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+
model = tranception.model_pytorch.TranceptionLMHeadModel.from_pretrained(pretrained_model_name_or_path="PascalNotin/Tranception_Medium")
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elif model_type=="Large":
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model = tranception.model_pytorch.TranceptionLMHeadModel.from_pretrained(pretrained_model_name_or_path="PascalNotin/Tranception_Large")
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model.config.tokenizer = tokenizer
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all_single_mutants = create_all_single_mutants(sequence,AA_vocab,mutation_range_start,mutation_range_end)
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scores = model.score_mutants(DMS_data=all_single_mutants,
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requirements.txt
CHANGED
@@ -2,4 +2,5 @@ gradio
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transformers==4.17
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datasets==1.18.3
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biopython==1.78
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-
torch
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transformers==4.17
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datasets==1.18.3
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biopython==1.78
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+
torch
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seaborn
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