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| from colbert.infra.run import Run | |
| from colbert.data.collection import Collection | |
| import os | |
| import sys | |
| import git | |
| import tqdm | |
| import ujson | |
| import random | |
| from argparse import ArgumentParser | |
| from multiprocessing import Pool | |
| from colbert.utils.utils import groupby_first_item, print_message | |
| from utility.utils.qa_loaders import load_qas_, load_collection_ | |
| from utility.utils.save_metadata import format_metadata, get_metadata | |
| from utility.evaluate.annotate_EM_helpers import * | |
| from colbert.data.ranking import Ranking | |
| class AnnotateEM: | |
| def __init__(self, collection, qas): | |
| # TODO: These should just be Queries! But Queries needs to support looking up answers as qid2answers below. | |
| qas = load_qas_(qas) | |
| collection = Collection.cast(collection) # .tolist() #load_collection_(collection, retain_titles=True) | |
| self.parallel_pool = Pool(30) | |
| print_message('#> Tokenize the answers in the Q&As in parallel...') | |
| qas = list(self.parallel_pool.map(tokenize_all_answers, qas)) | |
| qid2answers = {qid: tok_answers for qid, _, tok_answers in qas} | |
| assert len(qas) == len(qid2answers), (len(qas), len(qid2answers)) | |
| self.qas, self.collection = qas, collection | |
| self.qid2answers = qid2answers | |
| def annotate(self, ranking): | |
| rankings = Ranking.cast(ranking) | |
| # print(len(rankings), rankings[0]) | |
| print_message('#> Lookup passages from PIDs...') | |
| expanded_rankings = [(qid, pid, rank, self.collection[pid], self.qid2answers[qid]) | |
| for qid, pid, rank, *_ in rankings.tolist()] | |
| print_message('#> Assign labels in parallel...') | |
| labeled_rankings = list(self.parallel_pool.map(assign_label_to_passage, enumerate(expanded_rankings))) | |
| # Dump output. | |
| self.qid2rankings = groupby_first_item(labeled_rankings) | |
| self.num_judged_queries, self.num_ranked_queries = check_sizes(self.qid2answers, self.qid2rankings) | |
| # Evaluation metrics and depths. | |
| self.success, self.counts = self._compute_labels(self.qid2answers, self.qid2rankings) | |
| print(rankings.provenance(), self.success) | |
| return Ranking(data=self.qid2rankings, provenance=("AnnotateEM", rankings.provenance())) | |
| def _compute_labels(self, qid2answers, qid2rankings): | |
| cutoffs = [1, 5, 10, 20, 30, 50, 100, 1000, 'all'] | |
| success = {cutoff: 0.0 for cutoff in cutoffs} | |
| counts = {cutoff: 0.0 for cutoff in cutoffs} | |
| for qid in qid2answers: | |
| if qid not in qid2rankings: | |
| continue | |
| prev_rank = 0 # ranks should start at one (i.e., and not zero) | |
| labels = [] | |
| for pid, rank, label in qid2rankings[qid]: | |
| assert rank == prev_rank+1, (qid, pid, (prev_rank, rank)) | |
| prev_rank = rank | |
| labels.append(label) | |
| for cutoff in cutoffs: | |
| if cutoff != 'all': | |
| success[cutoff] += sum(labels[:cutoff]) > 0 | |
| counts[cutoff] += sum(labels[:cutoff]) | |
| else: | |
| success[cutoff] += sum(labels) > 0 | |
| counts[cutoff] += sum(labels) | |
| return success, counts | |
| def save(self, new_path): | |
| print_message("#> Dumping output to", new_path, "...") | |
| Ranking(data=self.qid2rankings).save(new_path) | |
| # Dump metrics. | |
| with Run().open(f'{new_path}.metrics', 'w') as f: | |
| d = {'num_ranked_queries': self.num_ranked_queries, 'num_judged_queries': self.num_judged_queries} | |
| extra = '__WARNING' if self.num_judged_queries != self.num_ranked_queries else '' | |
| d[f'success{extra}'] = {k: v / self.num_judged_queries for k, v in self.success.items()} | |
| d[f'counts{extra}'] = {k: v / self.num_judged_queries for k, v in self.counts.items()} | |
| # d['arguments'] = get_metadata(args) # TODO: Need arguments... | |
| f.write(format_metadata(d) + '\n') | |
| if __name__ == '__main__': | |
| r = '/future/u/okhattab/root/unit/experiments/2021.08/retrieve.py/2021-09-04_15.50.02/ranking.tsv' | |
| r = '/future/u/okhattab/root/unit/experiments/2021.08/retrieve.py/2021-09-04_15.59.37/ranking.tsv' | |
| r = sys.argv[1] | |
| a = AnnotateEM(collection='/future/u/okhattab/root/unit/data/NQ-mini/collection.tsv', | |
| qas='/future/u/okhattab/root/unit/data/NQ-mini/dev/qas.json') | |
| a.annotate(ranking=r) | |