katielink commited on
Commit
539be96
1 Parent(s): 44fed4a

Update app.py

Browse files
Files changed (1) hide show
  1. app.py +7 -7
app.py CHANGED
@@ -16,7 +16,7 @@ from monai.transforms import (
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  BUNDLE_NAME = 'spleen_ct_segmentation_v0.1.0'
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  BUNDLE_PATH = os.path.join(torch.hub.get_dir(), 'bundle', BUNDLE_NAME)
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- examples = ['examples/BRATS_485.nii.gz']
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  model, _, _ = bundle.load(
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  name = BUNDLE_NAME,
@@ -60,14 +60,14 @@ def predict(input_file, z_axis, model=model, device=device):
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  input_image = data['image'].numpy()
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  pred_image = data['pred'].cpu().detach().numpy()
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- input_t1_image = input_image[0, :, :, z_axis]
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  input_t1c_image = input_image[1, :, :, z_axis]
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- input_t2_image = input_image[2, :, :, z_axis]
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- input_flair_image = input_image[3, :, :, z_axis]
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  pred_1_image = pred_image[0, 0, :, :, z_axis]
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- pred_2_image = pred_image[0, 1, :, :, z_axis]
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- pred_3_image = pred_image[0, 2, :, :, z_axis]
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  return input_t1c_image, pred_1_image
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@@ -81,7 +81,7 @@ iface = gr.Interface(
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  gr.Image(label='input image'),
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  gr.Image(label='segmentation')],
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  title='Segment Gliomas using MONAI',
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- examples=examples,
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  )
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  iface.launch()
 
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  BUNDLE_NAME = 'spleen_ct_segmentation_v0.1.0'
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  BUNDLE_PATH = os.path.join(torch.hub.get_dir(), 'bundle', BUNDLE_NAME)
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+ #examples = ['examples/BRATS_485.nii.gz']
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  model, _, _ = bundle.load(
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  name = BUNDLE_NAME,
 
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  input_image = data['image'].numpy()
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  pred_image = data['pred'].cpu().detach().numpy()
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+ #input_t1_image = input_image[0, :, :, z_axis]
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  input_t1c_image = input_image[1, :, :, z_axis]
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+ #input_t2_image = input_image[2, :, :, z_axis]
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+ #input_flair_image = input_image[3, :, :, z_axis]
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  pred_1_image = pred_image[0, 0, :, :, z_axis]
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+ #pred_2_image = pred_image[0, 1, :, :, z_axis]
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+ #pred_3_image = pred_image[0, 2, :, :, z_axis]
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  return input_t1c_image, pred_1_image
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  gr.Image(label='input image'),
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  gr.Image(label='segmentation')],
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  title='Segment Gliomas using MONAI',
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+ #examples=examples,
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  )
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  iface.launch()