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# DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
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Implementation of DiffDock, state-of-the-art method for molecular docking, by Gabriele Corso*, Hannes Stark*, Bowen Jing*, Regina Barzilay and Tommi Jaakkola.
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This repository contains all code, instructions and model weights necessary to run the method or to retrain a model.
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python -m evaluate --model_dir workdir/big_score_model --ckpt best_ema_inference_epoch_model.pt --confidence_ckpt best_model_epoch75.pt --confidence_model_dir workdir/confidence_model --run_name DiffDockInference --inference_steps 20 --split_path data/splits/timesplit_test --samples_per_complex 40 --batch_size 10
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# DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
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### [Paper on arXiv](https://arxiv.org/abs/2210.01776)
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Implementation of DiffDock, state-of-the-art method for molecular docking, by Gabriele Corso*, Hannes Stark*, Bowen Jing*, Regina Barzilay and Tommi Jaakkola.
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This repository contains all code, instructions and model weights necessary to run the method or to retrain a model.
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python -m evaluate --model_dir workdir/big_score_model --ckpt best_ema_inference_epoch_model.pt --confidence_ckpt best_model_epoch75.pt --confidence_model_dir workdir/confidence_model --run_name DiffDockInference --inference_steps 20 --split_path data/splits/timesplit_test --samples_per_complex 40 --batch_size 10
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## Citation
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@article{corso2022diffdock,
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title={DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking},
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author = {Corso, Gabriele and Stärk, Hannes and Jing, Bowen and Barzilay, Regina and Jaakkola, Tommi},
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journal={arXiv preprint arXiv:2210.01776},
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year={2022}
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}
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## License
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MIT
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![Alt Text](visualizations/example_6agt_symmetric.gif)
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