Joshua Kravitz
Initial commit
e284167
raw
history blame contribute delete
No virus
2.22 kB
{
"task": {
"id": "bac_16S_phylogeny",
"display_name": "16S Bacterial Phylogeny",
"description": "Evaluate on 16S Bacterial phylogeny distance correlation task.",
"modality": "dna",
"type": "eds",
"datasets": [
{
"path": "tattabio/bac_16S_sequences",
"revision": "efde1456b86748909cbcfecb07d783756d570aa3"
},
{
"path": "tattabio/bac_16S_distances",
"revision": "5c8ba5dfa600bb930d34af2fbc2b17f0acab62d3"
}
],
"primary_metric_id": "top_corr"
},
"model": {
"hf_name": "InstaDeepAI/nucleotide-transformer-v2-100m-multi-species",
"revision": "...",
"num_layers": 22,
"num_params": 97889132,
"embed_dim": 512
},
"dgeb_version": "0.0.0",
"results": [
{
"layer_number": 11,
"layer_display_name": "11",
"metrics": [
{
"id": "cos_sim",
"display_name": "cos_sim",
"description": null,
"value": 0.31696264570144556
},
{
"id": "manhattan",
"display_name": "manhattan",
"description": null,
"value": 0.3398798297254198
},
{
"id": "euclidean",
"display_name": "euclidean",
"description": null,
"value": 0.3384167443991009
},
{
"id": "top_corr",
"display_name": "top_corr",
"description": null,
"value": 0.3398798297254198
}
]
},
{
"layer_number": 21,
"layer_display_name": "21",
"metrics": [
{
"id": "cos_sim",
"display_name": "cos_sim",
"description": null,
"value": 0.17067324886079815
},
{
"id": "manhattan",
"display_name": "manhattan",
"description": null,
"value": 0.22902435877832863
},
{
"id": "euclidean",
"display_name": "euclidean",
"description": null,
"value": 0.2227097102546006
},
{
"id": "top_corr",
"display_name": "top_corr",
"description": null,
"value": 0.22902435877832863
}
]
}
]
}