Joshua Kravitz
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{
"task": {
"id": "bac_16S_phylogeny",
"display_name": "16S Bacterial Phylogeny",
"description": "Evaluate on 16S Bacterial phylogeny distance correlation task.",
"modality": "dna",
"type": "eds",
"datasets": [
{
"path": "tattabio/bac_16S_sequences",
"revision": "efde1456b86748909cbcfecb07d783756d570aa3"
},
{
"path": "tattabio/bac_16S_distances",
"revision": "5c8ba5dfa600bb930d34af2fbc2b17f0acab62d3"
}
],
"primary_metric_id": "top_corr"
},
"model": {
"hf_name": "InstaDeepAI/nucleotide-transformer-v2-250m-multi-species",
"revision": "...",
"num_layers": 24,
"num_params": 235120780,
"embed_dim": 768
},
"dgeb_version": "0.0.0",
"results": [
{
"layer_number": 12,
"layer_display_name": "12",
"metrics": [
{
"id": "cos_sim",
"display_name": "cos_sim",
"description": null,
"value": 0.24014165203750024
},
{
"id": "manhattan",
"display_name": "manhattan",
"description": null,
"value": 0.28990471689345415
},
{
"id": "euclidean",
"display_name": "euclidean",
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"value": 0.2909216542477827
},
{
"id": "top_corr",
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"value": 0.2909216542477827
}
]
},
{
"layer_number": 23,
"layer_display_name": "23",
"metrics": [
{
"id": "cos_sim",
"display_name": "cos_sim",
"description": null,
"value": 0.0408624668440742
},
{
"id": "manhattan",
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"description": null,
"value": 0.09721819145306612
},
{
"id": "euclidean",
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{
"id": "top_corr",
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}
]
}
]
}