# Model validation metrics import math import warnings from pathlib import Path import matplotlib.pyplot as plt import numpy as np import torch def fitness(x): # Model fitness as a weighted combination of metrics w = [0.0, 0.0, 0.1, 0.9] # weights for [P, R, mAP@0.5, mAP@0.5:0.95] return (x[:, :4] * w).sum(1) def ap_per_class(tp, conf, pred_cls, target_cls, plot=False, save_dir='.', names=()): """ Compute the average precision, given the recall and precision curves. Source: https://github.com/rafaelpadilla/Object-Detection-Metrics. # Arguments tp: True positives (nparray, nx1 or nx10). conf: Objectness value from 0-1 (nparray). pred_cls: Predicted object classes (nparray). target_cls: True object classes (nparray). plot: Plot precision-recall curve at mAP@0.5 save_dir: Plot save directory # Returns The average precision as computed in py-faster-rcnn. """ # Sort by objectness i = np.argsort(-conf) tp, conf, pred_cls = tp[i], conf[i], pred_cls[i] # Find unique classes unique_classes = np.unique(target_cls) nc = unique_classes.shape[0] # number of classes, number of detections # Create Precision-Recall curve and compute AP for each class px, py = np.linspace(0, 1, 1000), [] # for plotting ap, p, r = np.zeros((nc, tp.shape[1])), np.zeros((nc, 1000)), np.zeros((nc, 1000)) for ci, c in enumerate(unique_classes): i = pred_cls == c n_l = (target_cls == c).sum() # number of labels n_p = i.sum() # number of predictions if n_p == 0 or n_l == 0: continue else: # Accumulate FPs and TPs fpc = (1 - tp[i]).cumsum(0) tpc = tp[i].cumsum(0) # Recall recall = tpc / (n_l + 1e-16) # recall curve r[ci] = np.interp(-px, -conf[i], recall[:, 0], left=0) # negative x, xp because xp decreases # Precision precision = tpc / (tpc + fpc) # precision curve p[ci] = np.interp(-px, -conf[i], precision[:, 0], left=1) # p at pr_score # AP from recall-precision curve for j in range(tp.shape[1]): ap[ci, j], mpre, mrec = compute_ap(recall[:, j], precision[:, j]) if plot and j == 0: py.append(np.interp(px, mrec, mpre)) # precision at mAP@0.5 # Compute F1 (harmonic mean of precision and recall) f1 = 2 * p * r / (p + r + 1e-16) if plot: plot_pr_curve(px, py, ap, Path(save_dir) / 'PR_curve.png', names) plot_mc_curve(px, f1, Path(save_dir) / 'F1_curve.png', names, ylabel='F1') plot_mc_curve(px, p, Path(save_dir) / 'P_curve.png', names, ylabel='Precision') plot_mc_curve(px, r, Path(save_dir) / 'R_curve.png', names, ylabel='Recall') i = f1.mean(0).argmax() # max F1 index return p[:, i], r[:, i], ap, f1[:, i], unique_classes.astype('int32') def compute_ap(recall, precision): """ Compute the average precision, given the recall and precision curves # Arguments recall: The recall curve (list) precision: The precision curve (list) # Returns Average precision, precision curve, recall curve """ # Append sentinel values to beginning and end mrec = np.concatenate(([0.], recall, [recall[-1] + 0.01])) mpre = np.concatenate(([1.], precision, [0.])) # Compute the precision envelope mpre = np.flip(np.maximum.accumulate(np.flip(mpre))) # Integrate area under curve method = 'interp' # methods: 'continuous', 'interp' if method == 'interp': x = np.linspace(0, 1, 101) # 101-point interp (COCO) ap = np.trapz(np.interp(x, mrec, mpre), x) # integrate else: # 'continuous' i = np.where(mrec[1:] != mrec[:-1])[0] # points where x axis (recall) changes ap = np.sum((mrec[i + 1] - mrec[i]) * mpre[i + 1]) # area under curve return ap, mpre, mrec class ConfusionMatrix: # Updated version of https://github.com/kaanakan/object_detection_confusion_matrix def __init__(self, nc, conf=0.25, iou_thres=0.45): self.matrix = np.zeros((nc + 1, nc + 1)) self.nc = nc # number of classes self.conf = conf self.iou_thres = iou_thres def process_batch(self, detections, labels): """ Return intersection-over-union (Jaccard index) of boxes. Both sets of boxes are expected to be in (x1, y1, x2, y2) format. Arguments: detections (Array[N, 6]), x1, y1, x2, y2, conf, class labels (Array[M, 5]), class, x1, y1, x2, y2 Returns: None, updates confusion matrix accordingly """ detections = detections[detections[:, 4] > self.conf] gt_classes = labels[:, 0].int() detection_classes = detections[:, 5].int() iou = box_iou(labels[:, 1:], detections[:, :4]) x = torch.where(iou > self.iou_thres) if x[0].shape[0]: matches = torch.cat((torch.stack(x, 1), iou[x[0], x[1]][:, None]), 1).cpu().numpy() if x[0].shape[0] > 1: matches = matches[matches[:, 2].argsort()[::-1]] matches = matches[np.unique(matches[:, 1], return_index=True)[1]] matches = matches[matches[:, 2].argsort()[::-1]] matches = matches[np.unique(matches[:, 0], return_index=True)[1]] else: matches = np.zeros((0, 3)) n = matches.shape[0] > 0 m0, m1, _ = matches.transpose().astype(np.int16) for i, gc in enumerate(gt_classes): j = m0 == i if n and sum(j) == 1: self.matrix[detection_classes[m1[j]], gc] += 1 # correct else: self.matrix[self.nc, gc] += 1 # background FP if n: for i, dc in enumerate(detection_classes): if not any(m1 == i): self.matrix[dc, self.nc] += 1 # background FN def matrix(self): return self.matrix def plot(self, normalize=True, save_dir='', names=()): try: import seaborn as sn array = self.matrix / ((self.matrix.sum(0).reshape(1, -1) + 1E-6) if normalize else 1) # normalize columns array[array < 0.005] = np.nan # don't annotate (would appear as 0.00) fig = plt.figure(figsize=(12, 9), tight_layout=True) sn.set(font_scale=1.0 if self.nc < 50 else 0.8) # for label size labels = (0 < len(names) < 99) and len(names) == self.nc # apply names to ticklabels with warnings.catch_warnings(): warnings.simplefilter('ignore') # suppress empty matrix RuntimeWarning: All-NaN slice encountered sn.heatmap(array, annot=self.nc < 30, annot_kws={"size": 8}, cmap='Blues', fmt='.2f', square=True, xticklabels=names + ['background FP'] if labels else "auto", yticklabels=names + ['background FN'] if labels else "auto").set_facecolor((1, 1, 1)) fig.axes[0].set_xlabel('True') fig.axes[0].set_ylabel('Predicted') fig.savefig(Path(save_dir) / 'confusion_matrix.png', dpi=250) except Exception as e: print(f'WARNING: ConfusionMatrix plot failure: {e}') def print(self): for i in range(self.nc + 1): print(' '.join(map(str, self.matrix[i]))) def bbox_iou(box1, box2, x1y1x2y2=True, GIoU=False, DIoU=False, CIoU=False, eps=1e-7): # Returns the IoU of box1 to box2. box1 is 4, box2 is nx4 box2 = box2.T # Get the coordinates of bounding boxes if x1y1x2y2: # x1, y1, x2, y2 = box1 b1_x1, b1_y1, b1_x2, b1_y2 = box1[0], box1[1], box1[2], box1[3] b2_x1, b2_y1, b2_x2, b2_y2 = box2[0], box2[1], box2[2], box2[3] else: # transform from xywh to xyxy b1_x1, b1_x2 = box1[0] - box1[2] / 2, box1[0] + box1[2] / 2 b1_y1, b1_y2 = box1[1] - box1[3] / 2, box1[1] + box1[3] / 2 b2_x1, b2_x2 = box2[0] - box2[2] / 2, box2[0] + box2[2] / 2 b2_y1, b2_y2 = box2[1] - box2[3] / 2, box2[1] + box2[3] / 2 # Intersection area inter = (torch.min(b1_x2, b2_x2) - torch.max(b1_x1, b2_x1)).clamp(0) * \ (torch.min(b1_y2, b2_y2) - torch.max(b1_y1, b2_y1)).clamp(0) # Union Area w1, h1 = b1_x2 - b1_x1, b1_y2 - b1_y1 + eps w2, h2 = b2_x2 - b2_x1, b2_y2 - b2_y1 + eps union = w1 * h1 + w2 * h2 - inter + eps iou = inter / union if GIoU or DIoU or CIoU: cw = torch.max(b1_x2, b2_x2) - torch.min(b1_x1, b2_x1) # convex (smallest enclosing box) width ch = torch.max(b1_y2, b2_y2) - torch.min(b1_y1, b2_y1) # convex height if CIoU or DIoU: # Distance or Complete IoU https://arxiv.org/abs/1911.08287v1 c2 = cw ** 2 + ch ** 2 + eps # convex diagonal squared rho2 = ((b2_x1 + b2_x2 - b1_x1 - b1_x2) ** 2 + (b2_y1 + b2_y2 - b1_y1 - b1_y2) ** 2) / 4 # center distance squared if DIoU: return iou - rho2 / c2 # DIoU elif CIoU: # https://github.com/Zzh-tju/DIoU-SSD-pytorch/blob/master/utils/box/box_utils.py#L47 v = (4 / math.pi ** 2) * torch.pow(torch.atan(w2 / h2) - torch.atan(w1 / h1), 2) with torch.no_grad(): alpha = v / (v - iou + (1 + eps)) return iou - (rho2 / c2 + v * alpha) # CIoU else: # GIoU https://arxiv.org/pdf/1902.09630.pdf c_area = cw * ch + eps # convex area return iou - (c_area - union) / c_area # GIoU else: return iou # IoU def box_iou(box1, box2): # https://github.com/pytorch/vision/blob/master/torchvision/ops/boxes.py """ Return intersection-over-union (Jaccard index) of boxes. Both sets of boxes are expected to be in (x1, y1, x2, y2) format. Arguments: box1 (Tensor[N, 4]) box2 (Tensor[M, 4]) Returns: iou (Tensor[N, M]): the NxM matrix containing the pairwise IoU values for every element in boxes1 and boxes2 """ def box_area(box): # box = 4xn return (box[2] - box[0]) * (box[3] - box[1]) area1 = box_area(box1.T) area2 = box_area(box2.T) # inter(N,M) = (rb(N,M,2) - lt(N,M,2)).clamp(0).prod(2) inter = (torch.min(box1[:, None, 2:], box2[:, 2:]) - torch.max(box1[:, None, :2], box2[:, :2])).clamp(0).prod(2) return inter / (area1[:, None] + area2 - inter) # iou = inter / (area1 + area2 - inter) def wh_iou(wh1, wh2): # Returns the nxm IoU matrix. wh1 is nx2, wh2 is mx2 wh1 = wh1[:, None] # [N,1,2] wh2 = wh2[None] # [1,M,2] inter = torch.min(wh1, wh2).prod(2) # [N,M] return inter / (wh1.prod(2) + wh2.prod(2) - inter) # iou = inter / (area1 + area2 - inter) # Plots ---------------------------------------------------------------------------------------------------------------- def plot_pr_curve(px, py, ap, save_dir='pr_curve.png', names=()): # Precision-recall curve fig, ax = plt.subplots(1, 1, figsize=(9, 6), tight_layout=True) py = np.stack(py, axis=1) if 0 < len(names) < 21: # display per-class legend if < 21 classes for i, y in enumerate(py.T): ax.plot(px, y, linewidth=1, label=f'{names[i]} {ap[i, 0]:.3f}') # plot(recall, precision) else: ax.plot(px, py, linewidth=1, color='grey') # plot(recall, precision) ax.plot(px, py.mean(1), linewidth=3, color='blue', label='all classes %.3f mAP@0.5' % ap[:, 0].mean()) ax.set_xlabel('Recall') ax.set_ylabel('Precision') ax.set_xlim(0, 1) ax.set_ylim(0, 1) plt.legend(bbox_to_anchor=(1.04, 1), loc="upper left") fig.savefig(Path(save_dir), dpi=250) def plot_mc_curve(px, py, save_dir='mc_curve.png', names=(), xlabel='Confidence', ylabel='Metric'): # Metric-confidence curve fig, ax = plt.subplots(1, 1, figsize=(9, 6), tight_layout=True) if 0 < len(names) < 21: # display per-class legend if < 21 classes for i, y in enumerate(py): ax.plot(px, y, linewidth=1, label=f'{names[i]}') # plot(confidence, metric) else: ax.plot(px, py.T, linewidth=1, color='grey') # plot(confidence, metric) y = py.mean(0) ax.plot(px, y, linewidth=3, color='blue', label=f'all classes {y.max():.2f} at {px[y.argmax()]:.3f}') ax.set_xlabel(xlabel) ax.set_ylabel(ylabel) ax.set_xlim(0, 1) ax.set_ylim(0, 1) plt.legend(bbox_to_anchor=(1.04, 1), loc="upper left") fig.savefig(Path(save_dir), dpi=250)