End of training

README.md

@@ -0,0 +1,68 @@
+---
+library_name: transformers
+base_model: AIRI-Institute/gena-lm-bert-large-t2t
+tags:
+- generated_from_trainer
+metrics:
+- precision
+- recall
+- accuracy
+model-index:
+- name: gena-lm-bert-large-t2t_ft_BioS74_1kbpHG19_DHSs_H3K27AC_one_shot
+  results: []
+---
+
+<!-- This model card has been generated automatically according to the information the Trainer had access to. You
+should probably proofread and complete it, then remove this comment. -->
+
+# gena-lm-bert-large-t2t_ft_BioS74_1kbpHG19_DHSs_H3K27AC_one_shot
+
+This model is a fine-tuned version of [AIRI-Institute/gena-lm-bert-large-t2t](https://huggingface.co/AIRI-Institute/gena-lm-bert-large-t2t) on the None dataset.
+It achieves the following results on the evaluation set:
+- Loss: 0.9119
+- F1 Score: 0.6842
+- Precision: 0.7222
+- Recall: 0.65
+- Accuracy: 0.6842
+- Auc: 0.7528
+- Prc: 0.8171
+
+## Model description
+
+More information needed
+
+## Intended uses & limitations
+
+More information needed
+
+## Training and evaluation data
+
+More information needed
+
+## Training procedure
+
+### Training hyperparameters
+
+The following hyperparameters were used during training:
+- learning_rate: 1e-05
+- train_batch_size: 8
+- eval_batch_size: 8
+- seed: 42
+- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
+- lr_scheduler_type: linear
+- num_epochs: 20
+- mixed_precision_training: Native AMP
+
+### Training results
+
+| Training Loss | Epoch   | Step | Validation Loss | F1 Score | Precision | Recall | Accuracy | Auc    | Prc    |
+|:-------------:|:-------:|:----:|:---------------:|:--------:|:---------:|:------:|:--------:|:------:|:------:|
+| 0.4776        | 13.1579 | 500  | 0.9119          | 0.6842   | 0.7222    | 0.65   | 0.6842   | 0.7528 | 0.8171 |
+
+
+### Framework versions
+
+- Transformers 4.46.0.dev0
+- Pytorch 2.4.1+cu121
+- Datasets 2.18.0
+- Tokenizers 0.20.0

config.json

@@ -0,0 +1,32 @@
+{
+  "_name_or_path": "AIRI-Institute/gena-lm-bert-large-t2t",
+  "architectures": [
+    "BertForSequenceClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "auto_map": {
+    "AutoModel": "AIRI-Institute/gena-lm-bert-large-t2t--modeling_bert.BertForMaskedLM"
+  },
+  "classifier_dropout": null,
+  "gradient_checkpointing": false,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 1024,
+  "initializer_range": 0.02,
+  "intermediate_size": 4096,
+  "layer_norm_eps": 1e-05,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 16,
+  "num_hidden_layers": 24,
+  "pad_token_id": 3,
+  "position_embedding_type": "absolute",
+  "pre_layer_norm": true,
+  "problem_type": "single_label_classification",
+  "torch_dtype": "float32",
+  "transformers_version": "4.46.0.dev0",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "use_flash_attention": false,
+  "vocab_size": 32000
+}

model.safetensors

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:56cc418d720c815cfc8f202a60f494e97a8bf43568cc9830d10fe7fc1aa98150
+size 1346688816

special_tokens_map.json

@@ -0,0 +1,37 @@
+{
+  "cls_token": {
+    "content": "[CLS]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "mask_token": {
+    "content": "[MASK]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "pad_token": {
+    "content": "[PAD]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "sep_token": {
+    "content": "[SEP]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "unk_token": {
+    "content": "[UNK]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  }
+}

tokenizer_config.json

@@ -0,0 +1,60 @@
+{
+  "added_tokens_decoder": {
+    "0": {
+      "content": "[UNK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "1": {
+      "content": "[CLS]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "2": {
+      "content": "[SEP]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "3": {
+      "content": "[PAD]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "4": {
+      "content": "[MASK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "5": {
+      "content": "-",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "clean_up_tokenization_spaces": false,
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "model_max_length": 1000000000000000019884624838656,
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "tokenizer_class": "PreTrainedTokenizerFast",
+  "unk_token": "[UNK]"
+}

training_args.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d69c352a758707686c2ce6484c5f5cfcd38270836e8a104ce46dd249573d8862
+size 5304