Add scripts

flax_to_pytorch.py

@@ -1,5 +1,26 @@
-from transformers import T5ForConditionalGeneration, TFT5ForConditionalGeneration
-pt_model = T5ForConditionalGeneration.from_pretrained(".", from_flax=True)
-pt_model.save_pretrained(".")
-tf_model = TFT5ForConditionalGeneration.from_pretrained(".", from_pt=True)
-tf_model.save_pretrained(".")
+import torch
+import numpy as np
+import jax.numpy as jnp
+from transformers import AutoTokenizer
+from transformers import FlaxT5ForConditionalGeneration
+from transformers import T5ForConditionalGeneration
+tokenizer = AutoTokenizer.from_pretrained(".")
+model_fx = FlaxT5ForConditionalGeneration.from_pretrained(".")
+model_pt = T5ForConditionalGeneration.from_pretrained(".", from_flax=True)
+model_pt.save_pretrained("./")
+text = "Hoe gaat het?"
+e_input_ids_fx = tokenizer(text, return_tensors="np", padding=True, max_length=128, truncation=True)
+d_input_ids_fx = jnp.ones((e_input_ids_fx.input_ids.shape[0], 1), dtype="i4") * model_fx.config.decoder_start_token_id
+e_input_ids_pt = tokenizer(text, return_tensors="pt", padding=True, max_length=128, truncation=True)
+d_input_ids_pt = np.ones((e_input_ids_pt.input_ids.shape[0], 1), dtype="i4") * model_pt.config.decoder_start_token_id
+print(e_input_ids_fx)
+print(d_input_ids_fx)
+print()
+encoder_pt = model_fx.encode(**e_input_ids_pt)
+decoder_pt = model_fx.decode(d_input_ids_pt, encoder_pt)
+logits_pt = decoder_pt.logits
+print(logits_pt)
+encoder_fx = model_fx.encode(**e_input_ids_fx)
+decoder_fx = model_fx.decode(d_input_ids_fx, encoder_fx)
+logits_fx = decoder_fx.logits
+print(logits_fx)

run_t5.sh

@@ -1,5 +1,17 @@
 #!/bin/bash
 
+export HF_PROJECT="t5-base-dutch"
+
+# Variables for training the tokenizer and creating the config
+export VOCAB_SIZE="32000"
+export N_INPUT_SENTENCES="1000000" # Num of sentences to train the tokenizer
+export DATASET="yhavinga/mc4_nl_cleaned" # Name of the dataset in the Huggingface Hub
+export DATASET_CONFIG="full" # Config of the dataset in the Huggingface Hub
+export DATASET_SPLIT="train" # Split to use for training tokenizer and model
+export TEXT_FIELD="text" # Field containing the text to be used for training
+export CONFIG_TYPE="t5-base" # Config that our model will use
+export MODEL_PATH="${HOME}/data/${HF_PROJECT}" # Path to the model, e.g. here inside the mount
+
 python run_t5_mlm_flax.py \
     --output_dir="${MODEL_PATH}" \
     --model_type="t5" \
@@ -22,15 +34,4 @@ python run_t5_mlm_flax.py \
     --weight_decay="0.01" \
     --warmup_steps="10000" \
     --validation_split_count="15000" \
-    --push_to_hub \
-#    --adam_beta1="0.9" \
-#    --adam_beta2="0.98" \
-#    --resume_from_checkpoint="${MODEL_DIR}" \ # Uncomment to resume from ckpt
-#    --max_train_samples 100000 \
-#    --max_eval_samples 1000 \
-#    --adafactor \
-#    --save_steps="80000" \
-
-
-# Instead of adafactor: adamw
-
+    --push_to_hub

run_t5_mlm_flax.py

@@ -0,0 +1,966 @@
+#!/usr/bin/env python
+# coding=utf-8
+# Copyright 2021 The HuggingFace Team All rights reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+"""
+Pretraining the library models for T5-like span-masked language modeling on a text file or a dataset.
+
+Here is the full list of checkpoints on the hub that can be pretrained by this script:
+https://huggingface.co/models?filter=t5
+
+Adapted from the original version to support gradient accumulation and restarting.
+"""
+# You can also adapt this script on your own masked language modeling task. Pointers for this are left as comments.
+import logging
+import os
+import sys
+import time
+import json
+from dataclasses import dataclass, field
+from itertools import chain
+from pathlib import Path
+from typing import Dict, List, Optional
+
+import numpy as np
+from datasets import load_dataset
+from tqdm import tqdm
+
+import flax
+import jax
+import jax.numpy as jnp
+import optax
+from flax import jax_utils, traverse_util
+from flax.serialization import to_bytes, from_bytes
+from flax.training import train_state
+from flax.training.common_utils import get_metrics, onehot, shard
+# from huggingface_hub import Repository
+from transformers import (
+    CONFIG_MAPPING,
+    FLAX_MODEL_FOR_MASKED_LM_MAPPING,
+    AutoTokenizer,
+    BatchEncoding,
+    FlaxT5ForConditionalGeneration,
+    HfArgumentParser,
+    PreTrainedTokenizerBase,
+    T5Config,
+    TrainingArguments,
+    is_tensorboard_available,
+    set_seed,
+)
+# from transformers.file_utils import get_full_repo_name
+from transformers.models.t5.modeling_flax_t5 import shift_tokens_right
+
+logger = logging.getLogger(__name__)
+
+MODEL_CONFIG_CLASSES = list(FLAX_MODEL_FOR_MASKED_LM_MAPPING.keys())
+MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
+
+@dataclass
+class ModelArguments:
+    """
+    Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
+    """
+
+    model_name_or_path: Optional[str] = field(
+        default=None,
+        metadata={
+            "help": "The model checkpoint for weights initialization."
+            "Don't set if you want to train a model from scratch."
+        },
+    )
+    model_type: Optional[str] = field(
+        default=None,
+        metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
+    )
+    config_name: Optional[str] = field(
+        default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
+    )
+    tokenizer_name: Optional[str] = field(
+        default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
+    )
+    cache_dir: Optional[str] = field(
+        default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
+    )
+    use_fast_tokenizer: bool = field(
+        default=True,
+        metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
+    )
+    dtype: Optional[str] = field(
+        default="float32",
+        metadata={
+            "help": "Floating-point format in which the model weights should be initialized and trained. Choose one of `[float32, float16, bfloat16]`."
+        },
+    )
+    auth_token: Optional[str] = field(
+        default=None,
+        metadata={
+            "help": "Auth token for private repositories on the Huggingface Hub"
+        }
+    )
+
+
+@dataclass
+class DataTrainingArguments:
+    """
+    Arguments pertaining to what data we are going to input our model for training and eval.
+    """
+
+    dataset_name: Optional[str] = field(
+        default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
+    )
+    dataset_config_name: Optional[str] = field(
+        default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
+    )
+    train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
+    validation_file: Optional[str] = field(
+        default=None,
+        metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
+    )
+    train_ref_file: Optional[str] = field(
+        default=None,
+        metadata={"help": "An optional input train ref data file for whole word masking in Chinese."},
+    )
+    validation_ref_file: Optional[str] = field(
+        default=None,
+        metadata={"help": "An optional input validation ref data file for whole word masking in Chinese."},
+    )
+    overwrite_cache: bool = field(
+        default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
+    )
+    validation_split_count: Optional[int] = field(
+        default=10000,
+        metadata={
+            "help": "The count of the train set used as validation set in case there's no validation split"
+        },
+    )
+    max_seq_length: Optional[int] = field(
+        default=None,
+        metadata={
+            "help": "The maximum total input sequence length after tokenization and masking. Sequences longer than this will be truncated. Default to the max input length of the model."
+        },
+    )
+    preprocessing_num_workers: Optional[int] = field(
+        default=None,
+        metadata={"help": "The number of processes to use for the preprocessing."},
+    )
+    mlm_probability: float = field(
+        default=0.15, metadata={"help": "Ratio of tokens to mask for span masked language modeling loss"}
+    )
+    mean_noise_span_length: float = field(
+        default=3.0,
+        metadata={"help": "Mean span length of masked tokens"},
+    )
+    max_train_samples: Optional[int] = field(
+        default=None,
+        metadata={
+            "help": "For debugging purposes or quicker training, truncate the number of training examples to this "
+            "value if set."
+        },
+    )
+    max_eval_samples: Optional[int] = field(
+        default=None,
+        metadata={
+            "help": "For debugging purposes or quicker training, truncate the number of evaluation examples to this "
+            "value if set."
+        },
+    )
+
+    def __post_init__(self):
+        if self.dataset_name is None and self.train_file is None and self.validation_file is None:
+            raise ValueError("Need either a dataset name or a training/validation file.")
+        else:
+            if self.train_file is not None:
+                extension = self.train_file.split(".")[-1]
+                assert extension in ["csv", "json", "txt"], "`train_file` should be a csv, a json or a txt file."
+            if self.validation_file is not None:
+                extension = self.validation_file.split(".")[-1]
+                assert extension in ["csv", "json", "txt"], "`validation_file` should be a csv, a json or a txt file."
+
+
+def compute_input_and_target_lengths(inputs_length, noise_density, mean_noise_span_length):
+    """This function is copy of `random_spans_helper <https://github.com/google-research/text-to-text-transfer-transformer/blob/84f8bcc14b5f2c03de51bd3587609ba8f6bbd1cd/t5/data/preprocessors.py#L2466>`__ .
+
+    Training parameters to avoid padding with random_spans_noise_mask.
+    When training a model with random_spans_noise_mask, we would like to set the other
+    training hyperparmeters in a way that avoids padding.
+    This function helps us compute these hyperparameters.
+    We assume that each noise span in the input is replaced by extra_tokens_per_span_inputs sentinel tokens,
+    and each non-noise span in the targets is replaced by extra_tokens_per_span_targets sentinel tokens.
+    This function tells us the required number of tokens in the raw example (for split_tokens())
+    as well as the length of the encoded targets. Note that this function assumes
+    the inputs and targets will have EOS appended and includes that in the reported length.
+
+    Args:
+        inputs_length: an integer - desired length of the tokenized inputs sequence
+        noise_density: a float
+        mean_noise_span_length: a float
+    Returns:
+        tokens_length: length of original text in tokens
+        targets_length: an integer - length in tokens of encoded targets sequence
+    """
+
+    def _tokens_length_to_inputs_length_targets_length(tokens_length):
+        num_noise_tokens = int(round(tokens_length * noise_density))
+        num_nonnoise_tokens = tokens_length - num_noise_tokens
+        num_noise_spans = int(round(num_noise_tokens / mean_noise_span_length))
+        # inputs contain all nonnoise tokens, sentinels for all noise spans
+        # and one EOS token.
+        _input_length = num_nonnoise_tokens + num_noise_spans + 1
+        _output_length = num_noise_tokens + num_noise_spans + 1
+        return _input_length, _output_length
+
+    tokens_length = inputs_length
+
+    while _tokens_length_to_inputs_length_targets_length(tokens_length + 1)[0] <= inputs_length:
+        tokens_length += 1
+
+    inputs_length, targets_length = _tokens_length_to_inputs_length_targets_length(tokens_length)
+
+    # minor hack to get the targets length to be equal to inputs length
+    # which is more likely to have been set to a nice round number.
+    if noise_density == 0.5 and targets_length > inputs_length:
+        tokens_length -= 1
+        targets_length -= 1
+    return tokens_length, targets_length
+
+
+@flax.struct.dataclass
+class FlaxDataCollatorForT5MLM:
+    """
+    Data collator used for T5 span-masked language modeling.
+    It is made sure that after masking the inputs are of length `data_args.max_seq_length` and targets are also of fixed length.
+    For more information on how T5 span-masked language modeling works, one can take a look
+    at the `official paper <https://arxiv.org/pdf/1910.10683.pdf>`__
+    or the `official code for preprocessing <https://github.com/google-research/text-to-text-transfer-transformer/blob/master/t5/data/preprocessors.py>`__ .
+
+    Args:
+        tokenizer (:class:`~transformers.PreTrainedTokenizer` or :class:`~transformers.PreTrainedTokenizerFast`):
+            The tokenizer used for encoding the data.
+        noise_density (:obj:`float`):
+            The probability with which to (randomly) mask tokens in the input.
+        mean_noise_span_length (:obj:`float`):
+            The average span length of the masked tokens.
+        input_length (:obj:`int`):
+            The expected input length after masking.
+        target_length (:obj:`int`):
+            The expected target length after masking.
+        pad_token_id: (:obj:`int`):
+            The pad token id of the model
+        decoder_start_token_id: (:obj:`int):
+            The decoder start token id of the model
+    """
+
+    tokenizer: PreTrainedTokenizerBase
+    noise_density: float
+    mean_noise_span_length: float
+    input_length: int
+    target_length: int
+    pad_token_id: int
+    decoder_start_token_id: int
+
+    def __call__(self, examples: List[Dict[str, np.ndarray]]) -> Dict[str, np.ndarray]:
+
+        # convert list to dict and tensorize input
+        batch = BatchEncoding(
+            {k: np.array([examples[i][k] for i in range(len(examples))]) for k, v in examples[0].items()}
+        )
+
+        input_ids = batch["input_ids"]
+        batch_size, expandend_input_length = input_ids.shape
+
+        mask_indices = np.asarray([self.random_spans_noise_mask(expandend_input_length) for i in range(batch_size)])
+        labels_mask = ~mask_indices
+
+        input_ids_sentinel = self.create_sentinel_ids(mask_indices.astype(np.int8))
+        labels_sentinel = self.create_sentinel_ids(labels_mask.astype(np.int8))
+
+        batch["input_ids"] = self.filter_input_ids(input_ids, input_ids_sentinel)
+        batch["labels"] = self.filter_input_ids(input_ids, labels_sentinel)
+
+        if batch["input_ids"].shape[-1] != self.input_length:
+            raise ValueError(
+                f"`input_ids` are incorrectly preprocessed. `input_ids` length is {batch['input_ids'].shape[-1]}, but should be {self.target_length}."
+            )
+
+        if batch["labels"].shape[-1] != self.target_length:
+            raise ValueError(
+                f"`labels` are incorrectly preprocessed. `labels` length is {batch['labels'].shape[-1]}, but should be {self.target_length}."
+            )
+
+        # to check that tokens are correctly proprocessed, one can run `self.tokenizer.batch_decode(input_ids)` and `self.tokenizer.batch_decode(labels)` here...
+        batch["decoder_input_ids"] = shift_tokens_right(
+            batch["labels"], self.pad_token_id, self.decoder_start_token_id
+        )
+
+        return batch
+
+    def create_sentinel_ids(self, mask_indices):
+        """
+        Sentinel ids creation given the indices that should be masked.
+        The start indices of each mask are replaced by the sentinel ids in increasing
+        order. Consecutive mask indices to be deleted are replaced with `-1`.
+        """
+        start_indices = mask_indices - np.roll(mask_indices, 1, axis=-1) * mask_indices
+        start_indices[:, 0] = mask_indices[:, 0]
+
+        sentinel_ids = np.where(start_indices != 0, np.cumsum(start_indices, axis=-1), start_indices)
+        sentinel_ids = np.where(sentinel_ids != 0, (len(self.tokenizer) - sentinel_ids), 0)
+        sentinel_ids -= mask_indices - start_indices
+
+        return sentinel_ids
+
+    def filter_input_ids(self, input_ids, sentinel_ids):
+        """
+        Puts sentinel mask on `input_ids` and fuse consecutive mask tokens into a single mask token by deleting.
+        This will reduce the sequence length from `expanded_inputs_length` to `input_length`.
+        """
+        batch_size = input_ids.shape[0]
+
+        input_ids_full = np.where(sentinel_ids != 0, sentinel_ids, input_ids)
+        input_ids = input_ids_full[input_ids_full > 0].reshape((batch_size, -1))
+        input_ids = np.concatenate(
+            [input_ids, np.full((batch_size, 1), self.tokenizer.eos_token_id, dtype=np.int32)], axis=-1
+        )
+        return input_ids
+
+    def random_spans_noise_mask(self, length):
+
+        """This function is copy of `random_spans_helper <https://github.com/google-research/text-to-text-transfer-transformer/blob/84f8bcc14b5f2c03de51bd3587609ba8f6bbd1cd/t5/data/preprocessors.py#L2682>`__ .
+
+        Noise mask consisting of random spans of noise tokens.
+        The number of noise tokens and the number of noise spans and non-noise spans
+        are determined deterministically as follows:
+        num_noise_tokens = round(length * noise_density)
+        num_nonnoise_spans = num_noise_spans = round(num_noise_tokens / mean_noise_span_length)
+        Spans alternate between non-noise and noise, beginning with non-noise.
+        Subject to the above restrictions, all masks are equally likely.
+
+        Args:
+            length: an int32 scalar (length of the incoming token sequence)
+            noise_density: a float - approximate density of output mask
+            mean_noise_span_length: a number
+
+        Returns:
+            a boolean tensor with shape [length]
+        """
+
+        orig_length = length
+
+        num_noise_tokens = int(np.round(length * self.noise_density))
+        # avoid degeneracy by ensuring positive numbers of noise and nonnoise tokens.
+        num_noise_tokens = min(max(num_noise_tokens, 1), length - 1)
+        num_noise_spans = int(np.round(num_noise_tokens / self.mean_noise_span_length))
+
+        # avoid degeneracy by ensuring positive number of noise spans
+        num_noise_spans = max(num_noise_spans, 1)
+        num_nonnoise_tokens = length - num_noise_tokens
+
+        # pick the lengths of the noise spans and the non-noise spans
+        def _random_segmentation(num_items, num_segments):
+            """Partition a sequence of items randomly into non-empty segments.
+            Args:
+                num_items: an integer scalar > 0
+                num_segments: an integer scalar in [1, num_items]
+            Returns:
+                a Tensor with shape [num_segments] containing positive integers that add
+                up to num_items
+            """
+            mask_indices = np.arange(num_items - 1) < (num_segments - 1)
+            np.random.shuffle(mask_indices)
+            first_in_segment = np.pad(mask_indices, [[1, 0]])
+            segment_id = np.cumsum(first_in_segment)
+            # count length of sub segments assuming that list is sorted
+            _, segment_length = np.unique(segment_id, return_counts=True)
+            return segment_length
+
+        noise_span_lengths = _random_segmentation(num_noise_tokens, num_noise_spans)
+        nonnoise_span_lengths = _random_segmentation(num_nonnoise_tokens, num_noise_spans)
+
+        interleaved_span_lengths = np.reshape(
+            np.stack([nonnoise_span_lengths, noise_span_lengths], axis=1), [num_noise_spans * 2]
+        )
+        span_starts = np.cumsum(interleaved_span_lengths)[:-1]
+        span_start_indicator = np.zeros((length,), dtype=np.int8)
+        span_start_indicator[span_starts] = True
+        span_num = np.cumsum(span_start_indicator)
+        is_noise = np.equal(span_num % 2, 1)
+
+        return is_noise[:orig_length]
+
+
+def generate_batch_splits(samples_idx: jnp.ndarray, batch_size: int) -> jnp.ndarray:
+    num_samples = len(samples_idx)
+    samples_to_remove = num_samples % batch_size
+
+    if samples_to_remove != 0:
+        samples_idx = samples_idx[:-samples_to_remove]
+    sections_split = num_samples // batch_size
+    batch_idx = np.split(samples_idx, sections_split)
+    return batch_idx
+
+
+def write_train_metric(summary_writer, train_metrics, train_time, step):
+    summary_writer.scalar("train_time", train_time, step)
+
+    train_metrics = get_metrics(train_metrics)
+    for key, vals in train_metrics.items():
+        tag = f"train_{key}"
+        for i, val in enumerate(vals):
+            summary_writer.scalar(tag, val, step - len(vals) + i + 1)
+
+
+def write_eval_metric(summary_writer, eval_metrics, step):
+    for metric_name, value in eval_metrics.items():
+        summary_writer.scalar(f"eval_{metric_name}", value, step)
+
+
+def mb_item(x):
+    return x.item() if hasattr(x, "item") else x
+
+
+def save_checkpoint(model, save_dir, state, cur_step: int, with_opt: bool = True, push_to_hub: bool = False):
+    state = jax_utils.unreplicate(state)
+    if with_opt:
+        logger.info(f'Saving optimizer and training state in {save_dir}...')
+        with open(os.path.join(save_dir, "opt_state.msgpack"), "wb") as f:
+            f.write(to_bytes(state.opt_state))
+        with open(os.path.join(save_dir, "training_state.json"), "w") as f:
+            json.dump({"step": state.step.item()}, f)
+    logger.info(f'Saving model in {save_dir} {"and pushing it to HF Hub" if push_to_hub else ""}')
+    model.save_pretrained(
+        save_dir,
+        params=state.params,
+        push_to_hub=push_to_hub,
+        commit_message=f"Saving weights and logs of step {cur_step}",
+    )
+
+def restore_checkpoint(load_dir, state):
+    logger.info(f"Restoring checkpoint from {load_dir}")
+    with open(os.path.join(load_dir, "flax_model.msgpack"), "rb") as f:
+        params = from_bytes(state.params, f.read())
+    with open(os.path.join(load_dir, "opt_state.msgpack"), "rb") as f:
+        opt_state = from_bytes(state.opt_state, f.read())
+    with open(os.path.join(load_dir, "training_state.json"), "r") as f:
+        training_state = json.load(f)
+    step = training_state["step"]
+    logger.info(f"Checkpoint restored at step {step}")
+    return state.replace(step=step, params=params, opt_state=opt_state), step
+
+
+if __name__ == "__main__":
+    # See all possible arguments in src/transformers/training_args.py
+    # or by passing the --help flag to this script.
+    # We now keep distinct sets of args, for a cleaner separation of concerns.
+
+    parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
+    if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
+        # If we pass only one argument to the script and it's the path to a json file,
+        # let's parse it to get our arguments.
+        model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
+    else:
+        model_args, data_args, training_args = parser.parse_args_into_dataclasses()
+
+    if (
+        os.path.exists(training_args.output_dir)
+        and os.listdir(training_args.output_dir)
+        and training_args.do_train
+        and not training_args.overwrite_output_dir
+    ):
+        raise ValueError(
+            f"Output directory ({training_args.output_dir}) already exists and is not empty."
+            "Use --overwrite_output_dir to overcome."
+        )
+
+    # Setup logging
+    logging.basicConfig(
+        format="%(asctime)s - %(levelname)s - %(name)s -   %(message)s",
+        level="NOTSET",
+        datefmt="[%X]",
+    )
+
+    # Log on each process the small summary:
+    logger = logging.getLogger(__name__)
+
+    # Set the verbosity to info of the Transformers logger (on main process only):
+    logger.info(f"Training/evaluation parameters {training_args}")
+
+    # Set seed before initializing model.
+    set_seed(training_args.seed)
+
+    # Handle the repository creation
+    # if training_args.push_to_hub:
+    #     if training_args.hub_model_id is None:
+    #         repo_name = get_full_repo_name(
+    #             Path(training_args.output_dir).absolute().name, token=training_args.hub_token
+    #         )
+    #     else:
+    #         repo_name = training_args.hub_model_id
+    #     repo = Repository(training_args.output_dir, clone_from=repo_name)
+
+    # Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
+    # or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
+    # (the dataset will be downloaded automatically from the datasets Hub).
+    #
+    # For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
+    # 'text' is found. You can easily tweak this behavior (see below).
+    if data_args.dataset_name is not None:
+        # Downloading and loading a dataset from the hub.
+        datasets = load_dataset(data_args.dataset_name, data_args.dataset_config_name, cache_dir=model_args.cache_dir)
+
+        if "validation" not in datasets.keys():
+            datasets["validation"] = load_dataset(
+                data_args.dataset_name,
+                data_args.dataset_config_name,
+                split=f"train[:{data_args.validation_split_count}]",
+                cache_dir=model_args.cache_dir,
+            )
+            datasets["train"] = load_dataset(
+                data_args.dataset_name,
+                data_args.dataset_config_name,
+                split=f"train[{data_args.validation_split_count}:]",
+                cache_dir=model_args.cache_dir,
+            )
+        else:
+            datasets["validation"] = load_dataset(
+                data_args.dataset_name,
+                data_args.dataset_config_name,
+                split=f"validation[:{data_args.validation_split_count}]",
+                cache_dir=model_args.cache_dir,
+            )
+            datasets["train"] = load_dataset(
+                data_args.dataset_name,
+                data_args.dataset_config_name,
+                split="train",
+                cache_dir=model_args.cache_dir,
+            )
+    else:
+        data_files = {}
+        if data_args.train_file is not None:
+            data_files["train"] = data_args.train_file
+        if data_args.validation_file is not None:
+            data_files["validation"] = data_args.validation_file
+        extension = data_args.train_file.split(".")[-1]
+        if extension == "txt":
+            extension = "text"
+        datasets = load_dataset(extension, data_files=data_files, cache_dir=model_args.cache_dir)
+
+    # See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
+    # https://huggingface.co/docs/datasets/loading_datasets.html.
+
+    # Load pretrained model and tokenizer
+
+    if model_args.tokenizer_name:
+        tokenizer = AutoTokenizer.from_pretrained(
+            model_args.tokenizer_name, 
+            cache_dir=model_args.cache_dir, 
+            use_fast=model_args.use_fast_tokenizer,
+            use_auth_token=model_args.auth_token
+        )
+    elif model_args.model_name_or_path:
+        tokenizer = AutoTokenizer.from_pretrained(
+            model_args.model_name_or_path, 
+            cache_dir=model_args.cache_dir, 
+            use_fast=model_args.use_fast_tokenizer,
+            use_auth_token=model_args.auth_token
+        )
+    else:
+        raise ValueError(
+            "You are instantiating a new tokenizer from scratch. This is not supported by this script."
+            "You can do it from another script, save it, and load it from here, using --tokenizer_name."
+        )
+
+    if model_args.config_name:
+        config = T5Config.from_pretrained(
+            model_args.config_name, cache_dir=model_args.cache_dir, vocab_size=len(tokenizer)
+        )
+    elif model_args.model_name_or_path:
+        config = T5Config.from_pretrained(
+            model_args.model_name_or_path, cache_dir=model_args.cache_dir, vocab_size=len(tokenizer)
+        )
+    else:
+        config = CONFIG_MAPPING[model_args.model_type]()
+        logger.warning("You are instantiating a new config instance from scratch.")
+
+    # Preprocessing the datasets.
+    # First we tokenize all the texts.
+    if training_args.do_train:
+        column_names = datasets["train"].column_names
+    else:
+        column_names = datasets["validation"].column_names
+    text_column_name = "text" if "text" in column_names else column_names[0]
+
+    max_seq_length = min(data_args.max_seq_length, tokenizer.model_max_length)
+
+    # Otherwise, we tokenize every text, then concatenate them together before splitting them in smaller parts.
+    # Since we make sure that all sequences are of the same length, no attention_mask is needed.
+    def tokenize_function(examples):
+        return tokenizer(examples[text_column_name], return_attention_mask=False)
+
+    logger.info(f"Start tokenization, remove_column_names = {column_names}")
+    tokenized_datasets = datasets.map(
+        tokenize_function,
+        batched=True,
+        num_proc=data_args.preprocessing_num_workers,
+        remove_columns=column_names,
+        load_from_cache_file=not data_args.overwrite_cache,
+    )
+
+    # T5-like span masked language modeling will fuse consecutively masked tokens to a single sentinel token.
+    # To ensure that the input length is `max_seq_length`, we need to increase the maximum length
+    # according to `mlm_probability` and `mean_noise_span_length`. We can also define the label length accordingly.
+    expanded_inputs_length, targets_length = compute_input_and_target_lengths(
+        inputs_length=max_seq_length,
+        noise_density=data_args.mlm_probability,
+        mean_noise_span_length=data_args.mean_noise_span_length,
+    )
+    logger.info(f"Max seq length: {max_seq_length}, expanded_inputs_length: {expanded_inputs_length}, targets_length: {targets_length}")
+
+    # Main data processing function that will concatenate all texts from our dataset and generate chunks of expanded_inputs_length.
+    def group_texts(examples):
+        # Concatenate all texts.
+        concatenated_examples = {k: list(chain(*examples[k])) for k in examples.keys()}
+        total_length = len(concatenated_examples[list(examples.keys())[0]])
+        # We drop the small remainder, we could add padding if the model supported it instead of this drop, you can
+        # customize this part to your needs.
+        if total_length >= expanded_inputs_length:
+            total_length = (total_length // expanded_inputs_length) * expanded_inputs_length
+        # Split by chunks of max_len.
+        result = {
+            k: [t[i : i + expanded_inputs_length] for i in range(0, total_length, expanded_inputs_length)]
+            for k, t in concatenated_examples.items()
+        }
+        return result
+
+    # Note that with `batched=True`, this map processes 1,000 texts together, so group_texts throws away a
+    # remainder for each of those groups of 1,000 texts. You can adjust that batch_size here but a higher value
+    # might be slower to preprocess.
+    #
+    # To speed up this part, we use multiprocessing. See the documentation of the map method for more information:
+    # https://huggingface.co/docs/datasets/package_reference/main_classes.html#datasets.Dataset.map
+    logger.info(f"Start group_texts")
+    tokenized_datasets = tokenized_datasets.map(
+        group_texts,
+        batched=True,
+        batch_size=200,
+        num_proc=data_args.preprocessing_num_workers,
+        load_from_cache_file=not data_args.overwrite_cache,
+    )
+
+    # Enable tensorboard only on the master node
+    has_tensorboard = is_tensorboard_available()
+    if has_tensorboard and jax.process_index() == 0:
+        try:
+            from flax.metrics.tensorboard import SummaryWriter
+
+            summary_writer = SummaryWriter(log_dir=Path(training_args.logging_dir))
+        except ImportError as ie:
+            has_tensorboard = False
+            logger.warning(
+                f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
+            )
+    else:
+        logger.warning(
+            "Unable to display metrics through TensorBoard because the package is not installed: "
+            "Please run pip install tensorboard to enable."
+        )
+
+    # Initialize our training
+    rng = jax.random.PRNGKey(training_args.seed)
+    dropout_rngs = jax.random.split(rng, jax.local_device_count())
+
+    if model_args.model_name_or_path:
+        model = FlaxT5ForConditionalGeneration.from_pretrained(
+            model_args.model_name_or_path, config=config, seed=training_args.seed, dtype=getattr(jnp, model_args.dtype)
+        )
+    else:
+        config.vocab_size = len(tokenizer)
+        model = FlaxT5ForConditionalGeneration(config, seed=training_args.seed, dtype=getattr(jnp, model_args.dtype))
+
+    # Data collator
+    # This one will take care of randomly masking the tokens.
+    data_collator = FlaxDataCollatorForT5MLM(
+        tokenizer=tokenizer,
+        noise_density=data_args.mlm_probability,
+        mean_noise_span_length=data_args.mean_noise_span_length,
+        input_length=max_seq_length,
+        target_length=targets_length,
+        pad_token_id=model.config.pad_token_id,
+        decoder_start_token_id=model.config.decoder_start_token_id,
+    )
+
+    # Store some constant
+    num_epochs = int(training_args.num_train_epochs)
+    train_batch_size = int(training_args.per_device_train_batch_size) * jax.device_count()
+    eval_batch_size = int(training_args.per_device_eval_batch_size) * jax.device_count()
+
+    steps_per_epoch = len(tokenized_datasets['train']) // train_batch_size
+    num_train_steps = steps_per_epoch * num_epochs
+
+    # Create learning rate schedule
+    if training_args.warmup_steps:
+        warmup_steps = training_args.warmup_steps
+    elif training_args.warmup_ratio:
+        # See https://arxiv.org/pdf/2104.07705.pdf for rationale of choosing the peak at % of training steps
+        warmup_steps = int(training_args.warmup_ratio * num_train_steps)
+        logging.info(f"Warmup steps set to {100*training_args.warmup_ratio}% = {warmup_steps} of total train steps {num_train_steps}")
+    else:
+        raise Exception("Need either --warmup_steps or --warmup_ratio")
+    warmup_fn = optax.linear_schedule(
+        init_value=0.0, end_value=training_args.learning_rate, transition_steps=warmup_steps
+    )
+    decay_fn = optax.linear_schedule(
+        init_value=training_args.learning_rate,
+        end_value=0,
+        transition_steps=num_train_steps - warmup_steps,
+    )
+    linear_decay_lr_schedule_fn = optax.join_schedules(
+        schedules=[warmup_fn, decay_fn], boundaries=[warmup_steps]
+    )
+
+    # We use Optax's "masking" functionality to not apply weight decay
+    # to bias and LayerNorm scale parameters. decay_mask_fn returns a
+    # mask boolean with the same structure as the parameters.
+    # The mask is True for parameters that should be decayed.
+    def decay_mask_fn(params):
+        flat_params = traverse_util.flatten_dict(params)
+        flat_mask = {
+            path: (path[-1] != "bias" and path[-2:] not in [("layer_norm", "scale"), ("final_layer_norm", "scale")])
+            for path in flat_params
+        }
+        return traverse_util.unflatten_dict(flat_mask)
+
+    # create adam optimizer
+    if training_args.adafactor:
+        # We use the default parameters here to initialize adafactor,
+        # For more details about the parameters please check https://github.com/deepmind/optax/blob/ed02befef9bf81cbbf236be3d2b0e032e9ed4a40/optax/_src/alias.py#L74
+        optimizer = optax.adafactor(
+            learning_rate=linear_decay_lr_schedule_fn,
+        )
+    else:
+        optimizer = optax.adamw(
+            learning_rate=linear_decay_lr_schedule_fn,
+            b1=training_args.adam_beta1,
+            b2=training_args.adam_beta2,
+            weight_decay=training_args.weight_decay,
+            mask=decay_mask_fn,
+        )
+
+    if training_args.gradient_accumulation_steps > 1:
+        optimizer = optax.MultiSteps(optimizer, training_args.gradient_accumulation_steps)
+    grad_accum_steps = training_args.gradient_accumulation_steps
+
+    # Setup train state
+    state = train_state.TrainState.create(apply_fn=model.__call__, params=model.params, tx=optimizer)
+
+    if training_args.resume_from_checkpoint:
+        state, resume_step = restore_checkpoint(training_args.resume_from_checkpoint, state)
+    else:
+        resume_step = 0
+
+    # Define gradient update step fn
+    def train_step(state, batch, dropout_rng):
+        dropout_rng, new_dropout_rng = jax.random.split(dropout_rng)
+
+        def loss_fn(params):
+            labels = batch.pop("labels")
+
+            logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
+
+            # compute loss
+            loss = optax.softmax_cross_entropy(logits, onehot(labels, logits.shape[-1])).mean()
+
+            return loss
+
+        grad_fn = jax.value_and_grad(loss_fn)
+        loss, grad = grad_fn(state.params)
+        grad = jax.lax.pmean(grad, "batch")
+        new_state = state.apply_gradients(grads=grad)
+
+        metrics = jax.lax.pmean(
+            {"loss": loss, "learning_rate": linear_decay_lr_schedule_fn(state.step // grad_accum_steps)},
+            axis_name="batch"
+        )
+
+        return new_state, metrics, new_dropout_rng
+
+    # Create parallel version of the train step
+    p_train_step = jax.pmap(train_step, "batch", donate_argnums=(0,))
+
+    # Define eval fn
+    def eval_step(params, batch):
+        labels = batch.pop("labels")
+
+        logits = model(**batch, params=params, train=False)[0]
+
+        # compute loss
+        loss = optax.softmax_cross_entropy(logits, onehot(labels, logits.shape[-1]))
+
+        # compute accuracy
+        accuracy = jnp.equal(jnp.argmax(logits, axis=-1), labels)
+
+        # summarize metrics
+        metrics = {"loss": loss.mean(), "accuracy": accuracy.mean()}
+        metrics = jax.lax.pmean(metrics, axis_name="batch")
+
+        return metrics
+
+    p_eval_step = jax.pmap(eval_step, "batch", donate_argnums=(0,))
+
+    logger.info("Replicate the train state on each device")
+
+    # import pydevd_pycharm
+    #
+    # pydevd_pycharm.settrace('localhost', port=12345, stdoutToServer=True, stderrToServer=True)
+
+    # Replicate the train state on each device
+    state = jax_utils.replicate(state)
+
+    logger.info("***** Running training *****")
+    logger.info(f"  Num examples = {len(datasets['train'])}")
+    logger.info(f"  Num tokenized group examples {len(tokenized_datasets['train'])}")
+    logger.info(f"  Num Epochs = {num_epochs}")
+    logger.info(f"  Instantaneous batch size per device = {training_args.per_device_train_batch_size}")
+    logger.info(f"  Total train batch size (w. parallel, distributed and grad_accum) = {train_batch_size}")
+    logger.info(f"  Total optimization steps = {num_train_steps}")
+
+    train_time = 0
+    epochs = tqdm(range(num_epochs), desc=f"Epoch ... (1/{num_epochs})", position=0)
+    for epoch in epochs:
+        # ======================== Training ================================
+        train_start = time.time()
+        train_metrics = []
+
+        # Create sampling rng
+        rng, input_rng = jax.random.split(rng)
+
+        # Generate an epoch by shuffling sampling indices from the train dataset
+        num_train_samples = len(tokenized_datasets["train"])
+        # train_samples_idx = jax.random.permutation(input_rng, jnp.arange(num_train_samples))
+        # train_batch_idx = generate_batch_splits(train_samples_idx, train_batch_size)
+
+        ## IF THE DATASET IS TOO LONG, WE ONLY PROCEED SEQUENTIALLY WITHOUT SHUFFLING
+        samples_to_remove = num_train_samples % (train_batch_size // grad_accum_steps)
+        samples_idx = np.arange(num_train_samples)
+        if samples_to_remove != 0:
+            samples_idx = samples_idx[:-samples_to_remove]
+        steps = num_train_samples // (train_batch_size // grad_accum_steps)
+
+        # Gather the indexes for creating the batch and do a training step
+        # for step, batch_idx in enumerate(tqdm(train_batch_idx, desc="Training...", position=1)):
+        # samples = [tokenized_datasets["train"][int(idx)] for idx in batch_idx]
+        for step in tqdm(range(steps), desc="Training...", position=1):
+            cur_step = epoch * (num_train_samples // train_batch_size) + step
+            # skip to the step from which we are resuming
+            if cur_step < resume_step:
+                continue
+
+            batch_idx = [x for x in range(step * train_batch_size, (step + 1) * train_batch_size)]
+            samples = [tokenized_datasets["train"][int(idx)] for idx in batch_idx]
+            try:
+                model_inputs = data_collator(samples)
+            except ValueError as e:
+                logger.warning(str(e))
+                logger.info(f"Continuing with the next batch")
+                continue
+
+            # Model forward
+            model_inputs = shard(model_inputs.data)
+            state, train_metric, dropout_rngs = p_train_step(state, model_inputs, dropout_rngs)
+            train_metrics.append(train_metric)
+
+            if cur_step % training_args.logging_steps * grad_accum_steps == 0 and cur_step > 0:
+                # Save metrics
+                train_metric = jax_utils.unreplicate(train_metric)
+                train_time += time.time() - train_start
+                if has_tensorboard and jax.process_index() == 0:
+                    write_train_metric(summary_writer, train_metrics, train_time, cur_step)
+
+                epochs.write(
+                    f"Step... ({cur_step} | Loss: {train_metric['loss'].mean()}, Learning Rate: {train_metric['learning_rate'].mean()})"
+                )
+
+                train_metrics = []
+
+            if cur_step % training_args.eval_steps * grad_accum_steps == 0 and cur_step > 0:
+                # ======================== Evaluating ==============================
+                num_eval_samples = len(tokenized_datasets["validation"])
+                eval_samples_idx = jnp.arange(num_eval_samples)
+                eval_batch_idx = generate_batch_splits(eval_samples_idx, eval_batch_size)
+
+                eval_metrics = []
+                for i, batch_idx in enumerate(tqdm(eval_batch_idx, desc="Evaluating ...", position=2)):
+                    samples = [tokenized_datasets["validation"][int(idx)] for idx in batch_idx]
+                    model_inputs = data_collator(samples)
+
+                    # Model forward
+                    model_inputs = shard(model_inputs.data)
+                    metrics = p_eval_step(state.params, model_inputs)
+                    eval_metrics.append(metrics)
+
+                # get eval metrics
+                eval_metrics = get_metrics(eval_metrics)
+                eval_metrics = jax.tree_map(jnp.mean, eval_metrics)
+
+                # Update progress bar
+                epochs.write(f"Step... ({cur_step} | Loss: {eval_metrics['loss']}, Acc: {eval_metrics['accuracy']})")
+
+                # Save metrics
+                if has_tensorboard and jax.process_index() == 0:
+                    write_eval_metric(summary_writer, eval_metrics, cur_step)
+
+            if cur_step % training_args.save_steps * grad_accum_steps == 0 and cur_step > 0:
+                # save checkpoint after each epoch and push checkpoint to the hub
+                if jax.process_index() == 0:
+                    # params = jax.device_get(jax.tree_map(lambda x: x[0], state.params))
+                    # model.save_pretrained(training_args.output_dir, params=params)
+                    # tokenizer.save_pretrained(training_args.output_dir)
+                    # if training_args.push_to_hub:
+                    #     repo.push_to_hub(commit_message=f"Saving weights and logs of step {cur_step}", blocking=False)
+                    save_checkpoint(model, training_args.output_dir, state, cur_step, with_opt=False, push_to_hub=True)
+
+    # Eval after training
+    if training_args.do_eval:
+        num_eval_samples = len(tokenized_datasets["validation"])
+        eval_samples_idx = jnp.arange(num_eval_samples)
+        eval_batch_idx = generate_batch_splits(eval_samples_idx, eval_batch_size)
+
+        eval_metrics = []
+        for i, batch_idx in enumerate(tqdm(eval_batch_idx, desc="Evaluating ...", position=2)):
+            samples = [tokenized_datasets["validation"][int(idx)] for idx in batch_idx]
+            model_inputs = data_collator(samples)
+
+            # Model forward
+            model_inputs = shard(model_inputs.data)
+            metrics = p_eval_step(state.params, model_inputs)
+            eval_metrics.append(metrics)
+
+        # get eval metrics
+        eval_metrics = get_metrics(eval_metrics)
+        eval_metrics = jax.tree_map(lambda metric: jnp.mean(metric).item(), eval_metrics)
+
+        if jax.process_index() == 0:
+            eval_metrics = {f"eval_{metric_name}": value for metric_name, value in eval_metrics.items()}
+            path = os.path.join(training_args.output_dir, "eval_results.json")
+            with open(path, "w") as f:
+                json.dump(eval_metrics, f, indent=4, sort_keys=True)
+
+    # Save model at end
+    if jax.process_index() == 0:
+        # params = jax.device_get(jax.tree_map(lambda x: x[0], state.params))
+        # model.save_pretrained(training_args.output_dir, params=params)
+        # tokenizer.save_pretrained(training_args.output_dir)
+        # if training_args.push_to_hub:
+        #     repo.push_to_hub(commit_message=f"Saving weights and logs of step {cur_step}", blocking=False)
+        #
+        save_checkpoint(model, training_args.output_dir, state, cur_step, with_opt=False, push_to_hub=True)