Token Classification
Collection
12 items
•
Updated
This model is a fine-tuned version of bert-base-cased.
It achieves the following results on the evaluation set:
Loss: 0.2066
Dna:
Rna:
Cell Line:
Cell Type:
Protein:
Overall
For more information on how it was created, check out the following link: https://github.com/DunnBC22/NLP_Projects/blob/main/Token%20Classification/Monolingual/tner-bionlp2004/NER%20Project%20Using%20tner-bionlp%202004%20Dataset%20(BERT-Base).ipynb
This model is intended to demonstrate my ability to solve a complex problem using technology.
Dataset Source: https://huggingface.co/datasets/tner/bionlp2004
The following hyperparameters were used during training:
Training Loss | Epoch | Step | Valid. Loss | Dna Precision | Dna Recall | Dna F1 | Dna Number | Rna Precision | Rna Recall | Rna F1 | Rna Number | Cell Line Precision | Cell Type Recall | Cell Type F1 | Cell Type Number | Cell Type | Protein Precision | Protein Recall | Protein F1 | Protein Number | Overall Precision | Overall Recall | Overall F1 | Overall Accuracy |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0.1701 | 1.0 | 1039 | 0.1927 | 0.6153 | 0.7254 | 0.6658 | 1056 | 0.6617 | 0.7458 | 0.7012 | 118 | 0.4670 | 0.608 | 0.5282 | 500 | 0.6997 | 0.7158 | 0.7077 | 1921 | 0.6603 | 0.7833 | 0.7166 | 5067 | 0.6499 |
0.145 | 2.0 | 2078 | 0.1981 | 0.6364 | 0.7443 | 0.6862 | 1056 | 0.6408 | 0.7712 | 0.7000 | 118 | 0.4607 | 0.668 | 0.5453 | 500 | 0.7376 | 0.7022 | 0.7195 | 1921 | 0.6759 | 0.8149 | 0.7389 | 5067 | 0.6662 |
0.1116 | 3.0 | 3117 | 0.2066 | 0.6619 | 0.7472 | 0.7020 | 1056 | 0.5890 | 0.7288 | 0.6515 | 118 | 0.4759 | 0.67 | 0.5565 | 500 | 0.7294 | 0.7100 | 0.7196 | 1921 | 0.6658 | 0.8263 | 0.7374 | 5067 | 0.6628 |