README.md

metadata

license: cc-by-nc-sa-4.0

Model Card for hest-tissue-seg

DeepLabV3 model finetuned on HEST-1k and Acrobat for IHC/H&E tissue segmentation.

Please visit the HEST-library for instructions.

How to cite:

@article{jaume2024hest,
    author = {Jaume, Guillaume and Doucet, Paul and Song, Andrew H. and Lu, Ming Y. and Almagro-Perez, Cristina and Wagner, Sophia J. and Vaidya, Anurag J. and Chen, Richard J. and Williamson, Drew F. K. and Kim, Ahrong and Mahmood, Faisal},
    title = {{HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis}},
    journal = {arXiv},
    year = {2024},
    month = jun,
    eprint = {2406.16192},
    url = {https://arxiv.org/abs/2406.16192v1}
}

Contact:

• Guillaume Jaume Harvard Medical School, Boston, Mahmood Lab ([email protected])
• Paul Doucet Harvard Medical School, Boston, Mahmood Lab ([email protected])

The dataset is distributed under the Attribution-NonCommercial-ShareAlike 4.0 International license (CC BY-NC-SA 4.0 Deed)