metadata

model_name: mistralmed
library_name: peft
base_model: mistralai/Mistral-7B-v0.1
license: mit
datasets:
  - keivalya/MedQuad-MedicalQnADataset
language:
  - en
tags:
  - medical

Model Card for Tonic/MistralMed

This is a medicine-focussed mistral fine tuned using keivalya/MedQuad-MedicalQnADataset

Model Details

Model Description

Trying to get better at medical Q & A

Developed by: Tonic
Shared by : Tonic
Model type: Mistral Fine-Tune
Language(s) (NLP): English
License: MIT2.0
Finetuned from model : mistralai/Mistral-7B-v0.1

Model Sources

Repository: Tonic/mistralmed
Code : github
Demo : Tonic/MistralMed_Chat

Uses

This model can be used the same way you normally use mistral

Direct Use

This model can do better in medical question and answer scenarios.

Downstream Use

This model is intended to be further fine tuned.

Recommendations

Do Not Use As Is
Fine Tune This Model Further
For Educational Purposes Only
Benchmark your model usage
Evaluate the model before use

Users (both direct and downstream) should be made aware of the risks, biases and limitations of the model. More information needed for further recommendations.

How to Get Started with the Model

Use the code below to get started with the model.

pseudolab/MistralMED_Chat

from transformers import AutoConfig, AutoTokenizer, AutoModelForSeq2SeqLM, AutoModelForCausalLM, MistralForCausalLM
from peft import PeftModel, PeftConfig
import torch
import gradio as gr
import random
from textwrap import wrap

def wrap_text(text, width=90):
    lines = text.split('\n')
    wrapped_lines = [textwrap.fill(line, width=width) for line in lines]
    wrapped_text = '\n'.join(wrapped_lines)
    return wrapped_text

def multimodal_prompt(user_input, system_prompt="You are an expert medical analyst:"):
    formatted_input = f"<s>[INST]{system_prompt} {user_input}[/INST]"

    encodeds = tokenizer(formatted_input, return_tensors="pt", add_special_tokens=False)
    model_inputs = encodeds.to(device)

    output = model.generate(
        **model_inputs,
        max_length=max_length,
        use_cache=True,
        early_stopping=True,
        bos_token_id=model.config.bos_token_id,
        eos_token_id=model.config.eos_token_id,
        pad_token_id=model.config.eos_token_id,
        temperature=0.1,
        do_sample=True
    )

    response_text = tokenizer.decode(output[0], skip_special_tokens=True)

    return response_text

device = "cuda" if torch.cuda.is_available() else "cpu"

base_model_id = "mistralai/Mistral-7B-v0.1"
model_directory = "Tonic/mistralmed"

tokenizer = AutoTokenizer.from_pretrained("mistralai/Mistral-7B-v0.1", trust_remote_code=True, padding_side="left")
tokenizer.pad_token = tokenizer.eos_token
tokenizer.padding_side = 'left'

peft_config = PeftConfig.from_pretrained("Tonic/mistralmed", token="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")
peft_model = MistralForCausalLM.from_pretrained("mistralai/Mistral-7B-v0.1", trust_remote_code=True)
peft_model = PeftModel.from_pretrained(peft_model, "Tonic/mistralmed", token="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")

class ChatBot:
    def __init__(self):
        self.history = []

    def predict(self, user_input, system_prompt="You are an expert medical analyst:"):
        formatted_input = f"<s>[INST]{system_prompt} {user_input}[/INST]"

        user_input_ids = tokenizer.encode(formatted_input, return_tensors="pt")

        response = peft_model.generate(input_ids=user_input_ids, max_length=512, pad_token_id=tokenizer.eos_token_id)

        response_text = tokenizer.decode(response[0], skip_special_tokens=True)
        return response_text

bot = ChatBot()

title = "👋🏻토닉의 미스트랄메드 채팅에 오신 것을 환영합니다🚀👋🏻Welcome to Tonic's MistralMed Chat🚀"
description = "이 공간을 사용하여 현재 모델을 테스트할 수 있습니다. [(Tonic/MistralMed)](https://huggingface.co/Tonic/MistralMed) 또는 이 공간을 복제하고 로컬 또는 🤗HuggingFace에서 사용할 수 있습니다. [Discord에서 함께 만들기 위해 Discord에 가입하십시오](https://discord.gg/VqTxc76K3u). You can use this Space to test out the current model [(Tonic/MistralMed)](https://huggingface.co/Tonic/MistralMed) or duplicate this Space and use it locally or on 🤗HuggingFace. [Join me on Discord to build together](https://discord.gg/VqTxc76K3u)."
examples = [["[Question:] What is the proper treatment for buccal herpes?", "You are a medicine and public health expert, you will receive a question, answer the question, and complete the answer"]]

iface = gr.Interface(
    fn=bot.predict,
    title=title,
    description=description,
    examples=examples,
    inputs=["text", "text"],
    outputs="text",
    theme="ParityError/Anime"
)

iface.launch()

Training Details

Training Data

MedQuad

Training Procedure

Dataset({
    features: ['qtype', 'Question', 'Answer'],
    num_rows: 16407
})

Preprocessing [optional]

MistralForCausalLM(
  (model): MistralModel(
    (embed_tokens): Embedding(32000, 4096)
    (layers): ModuleList(
      (0-31): 32 x MistralDecoderLayer(
        (self_attn): MistralAttention(
          (q_proj): Linear4bit(in_features=4096, out_features=4096, bias=False)
          (k_proj): Linear4bit(in_features=4096, out_features=1024, bias=False)
          (v_proj): Linear4bit(in_features=4096, out_features=1024, bias=False)
          (o_proj): Linear4bit(in_features=4096, out_features=4096, bias=False)
          (rotary_emb): MistralRotaryEmbedding()
        )
        (mlp): MistralMLP(
          (gate_proj): Linear4bit(in_features=4096, out_features=14336, bias=False)
          (up_proj): Linear4bit(in_features=4096, out_features=14336, bias=False)
          (down_proj): Linear4bit(in_features=14336, out_features=4096, bias=False)
          (act_fn): SiLUActivation()
        )
        (input_layernorm): MistralRMSNorm()
        (post_attention_layernorm): MistralRMSNorm()
      )
    )
    (norm): MistralRMSNorm()
  )
  (lm_head): Linear(in_features=4096, out_features=32000, bias=False)
)

Training Hyperparameters

Training regime:

config = LoraConfig(
    r=8,
    lora_alpha=16,
    target_modules=[
        "q_proj",
        "k_proj",
        "v_proj",
        "o_proj",
        "gate_proj",
        "up_proj",
        "down_proj",
        "lm_head",
    ],
    bias="none",
    lora_dropout=0.05,  # Conventional
    task_type="CAUSAL_LM",
)

Speeds, Sizes, Times [optional]

trainable params: 21260288 || all params: 3773331456 || trainable%: 0.5634354746703705
TrainOutput(global_step=1000, training_loss=0.47226515007019043, metrics={'train_runtime': 3143.4141, 'train_samples_per_second': 2.545, 'train_steps_per_second': 0.318, 'total_flos': 1.75274075357184e+17, 'train_loss': 0.47226515007019043, 'epoch': 0.49})

Environmental Impact

Carbon emissions can be estimated using the Machine Learning Impact calculator presented in Lacoste et al. (2019).

Hardware Type: A100
Hours used: 1
Cloud Provider: Google
Compute Region: East1
Carbon Emitted: 0.09

Training Results

[1000/1000 52:20, Epoch 0/1]

Step	Training Loss
50	0.474200
100	0.523300
150	0.484500
200	0.482800
250	0.498800
300	0.451800
350	0.491800
400	0.488000
450	0.472800
500	0.460400
550	0.464700
600	0.484800
650	0.474600
700	0.477900
750	0.445300
800	0.431300
850	0.461500
900	0.451200
950	0.470800
1000	0.454900

Model Architecture and Objective

PeftModelForCausalLM(
  (base_model): LoraModel(
    (model): MistralForCausalLM(
      (model): MistralModel(
        (embed_tokens): Embedding(32000, 4096)
        (layers): ModuleList(
          (0-31): 32 x MistralDecoderLayer(
            (self_attn): MistralAttention(
              (q_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=4096, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=4096, bias=False)
              )
              (k_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=1024, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=1024, bias=False)
              )
              (v_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=1024, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=1024, bias=False)
              )
              (o_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=4096, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=4096, bias=False)
              )
              (rotary_emb): MistralRotaryEmbedding()
            )
            (mlp): MistralMLP(
              (gate_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=14336, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=14336, bias=False)
              )
              (up_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=14336, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=14336, bias=False)
              )
              (down_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=14336, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=4096, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=14336, out_features=4096, bias=False)
              )
              (act_fn): SiLUActivation()
            )
            (input_layernorm): MistralRMSNorm()
            (post_attention_layernorm): MistralRMSNorm()
          )
        )
        (norm): MistralRMSNorm()
      )
      (lm_head): Linear(
        in_features=4096, out_features=32000, bias=False
        (lora_dropout): ModuleDict(
          (default): Dropout(p=0.05, inplace=False)
        )
        (lora_A): ModuleDict(
          (default): Linear(in_features=4096, out_features=8, bias=False)
        )
        (lora_B): ModuleDict(
          (default): Linear(in_features=8, out_features=32000, bias=False)
        )
        (lora_embedding_A): ParameterDict()
        (lora_embedding_B): ParameterDict()
      )
    )
  )
)

Hardware

A100

Model Card Authors [optional]

Tonic

Model Card Contact

Tonic

Training procedure

The following bitsandbytes quantization config was used during training:

quant_method: bitsandbytes
load_in_8bit: False
load_in_4bit: True
llm_int8_threshold: 6.0
llm_int8_skip_modules: None
llm_int8_enable_fp32_cpu_offload: False
llm_int8_has_fp16_weight: False
bnb_4bit_quant_type: nf4
bnb_4bit_use_double_quant: True
bnb_4bit_compute_dtype: bfloat16

Framework versions

PEFT 0.6.0.dev0