Christina Theodoris

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New activity in ctheodoris/Geneformer 1 day ago

AssertionError of extracts embedding from input data

4

#435 opened about 1 month ago by yuexiafx

New activity in ctheodoris/Geneformer 2 days ago

CRC results reproducibility

1

#456 opened 2 days ago by lurcelay

New activity in ctheodoris/Geneformer 3 days ago

Code problem: Where is the code for tokenizing in the preprocessing of pre-training data?

1

#455 opened 3 days ago by hanshieki

New activity in ctheodoris/Geneformer 4 days ago

How to Directly Obtain Gene and Cell Embedding Changes Without Predefined Cell States?

3

#454 opened 4 days ago by HarryShen666

New activity in ctheodoris/Geneformer 6 days ago

Update geneformer/emb_extractor.py

#453 opened 6 days ago by hchen725

Consistency of perturbation analysis results

2

#433 opened about 1 month ago by juginst

Possible bug in tokenizer (No objects to concatenate)

1

#449 opened 14 days ago by Arkimond9620

Update geneformer/tokenizer.py

#450 opened 13 days ago by hchen725

Disagreement between 30M and 95M cell state perturbation results

4

#451 opened 9 days ago by ZYSK-huggingface

Disagreement between 30M and 95M cell state perturbation results

1

#452 opened 6 days ago by ZYSK-huggingface

updated a model 9 days ago

ctheodoris/Geneformer

Fill-Mask • Updated 6 days ago • 1.53k • 204

New activity in ctheodoris/Geneformer 15 days ago

Adding tags to the model

1

#448 opened 15 days ago by canergen

New activity in ctheodoris/Geneformer 18 days ago

Questions about the train/validation/test/new data

1

#444 opened 25 days ago by Napert

multitask_cell_classification vs cell_classification pipeline

1

#445 opened 25 days ago by Napert

New activity in ctheodoris/Geneformer 30 days ago

Pre-trained embedded value extraction

1

#440 opened about 1 month ago by babykai

Use Geneformer to predict cell types

1

#441 opened about 1 month ago by jkobject

New activity in ctheodoris/Geneformer about 1 month ago

Can genes filtered before cell_state perturbation?

7

#439 opened about 1 month ago by ZYSK-huggingface

how state embed characterized in cell state mode and how to performe vs null mode

1

#438 opened about 1 month ago by ZYSK-huggingface

Errors of InSilicoPerturberStats

5

#436 opened about 1 month ago by ZYSK-huggingface

Error for large dataset tokenization in create_dataset

1

#437 opened about 1 month ago by elinor-med