|
--- |
|
license: cc-by-nc-4.0 |
|
tags: |
|
- biology |
|
- protein |
|
- antibody |
|
- VHH |
|
--- |
|
|
|
## VHHCorpus-2M |
|
|
|
VHHCorpus-2M is a corpus that contains over two million full-length amino acid sequences of variable domain of heavy chain of heavy chain antibody (VHH). |
|
We released VHHBERT, a VHH-specific language model pre-trained using VHHCorpus-2M on the [Hugging Face Hub](https://huggingface.co/COGNANO/VHHBERT). |
|
Further details on VHHCorpus-2M are described in our paper "[A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models](https://arxiv.org/abs/2405.18749).” |
|
|
|
## Columns |
|
|
|
| Column | Description | |
|
| --------------- | --------------------------------------------------------------------------------- | |
|
| VHH_sequence | Amino acid sequence of VHH | |
|
| subject_species | Species of the subject from which VHH was collected | |
|
| subject_name | Name of the subject from which VHH was collected | |
|
| subject_sex | Sex of the subject from which VHH was collected | |
|
|
|
## Links |
|
|
|
- Project Page: https://vhh-corpus.cognanous.com |
|
- Code: https://github.com/cognano/AVIDa-SARS-CoV-2 |
|
- Pre-trained Model: https://huggingface.co/COGNANO/VHHBERT |
|
- Paper: https://arxiv.org/abs/2405.18749 |
|
|
|
## Citation |
|
|
|
If you use VHHCorpus-2M in your research, please cite the following paper. |
|
|
|
```bibtex |
|
@inproceedings{tsuruta2024sars, |
|
title={A {SARS}-{C}o{V}-2 Interaction Dataset and {VHH} Sequence Corpus for Antibody Language Models}, |
|
author={Hirofumi Tsuruta and Hiroyuki Yamazaki and Ryota Maeda and Ryotaro Tamura and Akihiro Imura}, |
|
booktitle={Advances in Neural Information Processing Systems 37}, |
|
year={2024} |
|
} |
|
``` |
