README.md

File description for: Mesculenta_305_v6_PROseq_ISM_LOG2FC.txt.gz

Intergenic enhancer regions based on Lozano et al. 2021 (https://pubmed.ncbi.nlm.nih.gov/34499719/)

Genome version: Manihot esculenta reference genome v6.1 from Phytozome

CHR: Chromosome

POS: Physical position (bp)

REF: Reference allele

ALT: Alternative allele

LOG2FC: Log fold change in Intergenic enhancer probability (log2(p_mutated_sequence / p_original_sequence))

File description for: Mesculenta_v6_GeneExpression_ISM_LOG2FC.txt.gz

Gene expression prediction based on: Wilson et al. 2016 (https://pubmed.ncbi.nlm.nih.gov/28116755/)

Genome version: Manihot esculenta reference genome v6 from Ensembl 56

CHR: Chromosome

POS: Physical position (bp)

REF: Reference allele

ALT: Alternative allele

GENE: Gene ID

STRAND: Gene strand

TISSUE: Tissue type (Acronyms detailed in Figure 1 of Wilson et al.)

LOG2FC: Gene expression log fold change (log2(gene_exp_mutated_sequence / gene_exp_original_sequence))